BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0049.p (312 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PM1327 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 137 5e-32 YPO2499 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 134 2e-31 BH3731 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 133 6e-31 BMEI0392 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-typ... 130 3e-30 mll1013 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 127 3e-29 >PM1327 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Pmu Pasteurella multocida Length = 347 Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 148/297 (49%), Gaps = 39/297 (13%) Query: 48 LSPANLLNIAQQASYLALFAMAQTVVILTRGFDLALGPTVSMVSVGTA------LAMAGA 101 LS N++NI Q S + + ++ T VILT G DL++G V++ +V + G Sbjct: 37 LSTNNIINILLQVSIICVISVGMTYVILTGGIDLSVGSIVALSAVCLGVFTHWGMDWLGE 96 Query: 102 TASGHGTGSVLLAGLAAGFLLGIACGLFNGVVIALLGVNPFVATLGSYNIAIGVATTLSS 161 S ++++ + A +GI CG NG+VI V PF+ TLG IA G+A T+S Sbjct: 97 NPSSFSVLMIVISAIIATIFVGILCGYVNGLVIVYGKVTPFITTLGMMGIARGLALTISD 156 Query: 162 GRPVQGVPAPFSQIFYGG------SVFGIPAAIAITVGVGAVLHWTLTRTVFGRSLYLIG 215 G+ + P F G F +P + I + V V + LT+T+FGR +Y +G Sbjct: 157 GKTIYNFPDTLR--FLGNGRIALTETFALPVPVIIALLVVLVSFYVLTQTMFGRQIYALG 214 Query: 216 TN-------------------------XALGAIMMTARTGSGEPNLGGALSLQAIAGAVV 250 N A+GAI++ R + +P G L AIA V+ Sbjct: 215 GNREAVRLSGINIEKLEIKAYVINGALAAIGAIILVGRLNAAQPIAGNGYELDAIAATVI 274 Query: 251 GGTSLAGGRGGVGTAVLGALFITILSNGMNLTRIDGYVQMVVLGAIVIVGVLLDRLR 307 GGTSL GG G V + +GAL + +L NG+ L + Y+Q +++G ++I+ V LD+LR Sbjct: 275 GGTSLMGGVGSVVSTSIGALIMGVLQNGLTLLNVTSYLQRLIIGLVIILAVFLDQLR 331 >YPO2499 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 330 Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 110/340 (32%), Positives = 168/340 (49%), Gaps = 53/340 (15%) Query: 5 ELSVAAKNADRSKLAPGRW----LWSAALP-VALVALLLGFAAVDRGVLSPANLLNIAQQ 59 E S + + + + RW A LP + V L + + ++ L+ NL N+A+Q Sbjct: 5 EHSSSTQESGSTLHRHKRWEKLLHHPAMLPFIGFVVLFVLMSGLNDSFLTVNNLTNVARQ 64 Query: 60 ASYLALFAMAQTVVILTRGFDLALGPTVSMVSVGTALAMAGATASGHGTGSVLLAG---- 115 S A+ A+ T ILT G DL++GP +A++G+ A+G ++LAG Sbjct: 65 VSINAIIAVGMTCAILTGGIDLSVGPV---------MALSGSIAAG-----LMLAGIPIP 110 Query: 116 --LAAGFLLGIACGLFNGVVIALLGVNPFVATLGSYNIAIGVATTLSSGRPVQGVPAPFS 173 + A L+G GL NG IA L + P + TL S IA G+A + G P+ G+P FS Sbjct: 111 LAMMAALLVGALFGLANGSCIAYLRMPPIIVTLASMGIARGLALLYTGGYPISGLPDMFS 170 Query: 174 QIFYG-GSVFGIPAAIAITVGVGAVLHWTLTRTVFGRSLYLIGTNX-------------- 218 F+G G+V GI I I GV L FGR +Y IG N Sbjct: 171 --FFGRGTVLGIQVPILIMAGVYLFAWIMLNHLSFGRYIYAIGGNEEAARLSGIRVSRYK 228 Query: 219 -----------ALGAIMMTARTGSGEPNLGGALSLQAIAGAVVGGTSLAGGRGGVGTAVL 267 AL +++T+R SG+PN G L AIA V+GG +++GG+G + ++ Sbjct: 229 MLVYVVSGLTAALAGLVLTSRLMSGQPNAGEGFELDAIAAVVLGGAAISGGKGAIIGTLV 288 Query: 268 GALFITILSNGMNLTRIDGYVQMVVLGAIVIVGVLLDRLR 307 GA+ + +L+NG+NL + Y+Q VV G I++ + L +R Sbjct: 289 GAMMLGVLNNGLNLMSVSPYIQNVVKGGIILAAIYLSSVR 328 >BH3731 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bha Bacillus halodurans Length = 314 Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 150/301 (49%), Gaps = 36/301 (11%) Query: 33 LVALLLGFAAVDRGVLSPANLLNIAQQASYLALFAMAQTVVILTRGFDLALGPTVSMVSV 92 + L++ F D LS +N++N+ +Q S AL A T VILT G DL++G +++ S Sbjct: 22 FIVLIISFLNPD--FLSLSNIMNVLRQVSINALIAFGMTFVILTGGIDLSVGAILALSSA 79 Query: 93 GTALAMAGATASGHGTGSVLLAGLAAGFLLGIACGLFNGVVIALLGVNPFVATLGSYNIA 152 TA M + + + G L G G NG+VI+ V PF+ATL + I Sbjct: 80 VTAWLMVNSVDP--------ILAVLIGLLAGTLFGAINGLVISKGKVAPFIATLATMTIY 131 Query: 153 IGVATTLSSGRPVQGVPAP-FSQIFYGGSVFGIPAAIAITVGVGAVLHWTLTRTVFGRSL 211 G+ + GRP+ G + ++ G FGIP + +L+ L +T FGR + Sbjct: 132 RGLTLVFTDGRPISGFESSTMFEMLGRGYFFGIPVPAVTMIISFIILYLILKKTTFGRRV 191 Query: 212 YLIGTN-------------------------XALGAIMMTARTGSGEPNLGGALSLQAIA 246 Y +G N AL +++T+R S +P G L AIA Sbjct: 192 YAVGGNQEAAILSGIKVDRIKIYVYSLTGFLSALAGMILTSRLYSAQPTAGSMYELDAIA 251 Query: 247 GAVVGGTSLAGGRGGVGTAVLGALFITILSNGMNLTRIDGYVQMVVLGAIVIVGVLLDRL 306 V+GGTSL GGRG + ++GAL I +L+NG+NL + + Q VV G+++++ VLLDR Sbjct: 252 AVVLGGTSLTGGRGWIVGTLIGALIIGVLNNGLNLLGVSSFFQQVVKGSVILLAVLLDRR 311 Query: 307 R 307 + Sbjct: 312 K 312 >BMEI0392 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bme Brucella melitensis Length = 334 Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 154/307 (50%), Gaps = 37/307 (12%) Query: 33 LVALLLGFAAVDRGVLSPANLLNIAQQASYLALFAMAQTVVILTRGFDLALGPTVSMV-- 90 L+A +L F+ + L+ N+ N+ Q S + A+ T VILTRG DL++G V++ Sbjct: 33 LLATILSFS--NEYFLTAGNISNVLLQTSINGILAIGMTFVILTRGIDLSVGSVVALAGI 90 Query: 91 ---SVGTALAMAGATASGHGTGSVLLAGLAAGFLLGIACGLFNGVVIALLGVNPFVATLG 147 S T AMAG + + + G L+GI CG G +++ V FVATLG Sbjct: 91 VSASFATTSAMAGIAGAPYSP----FIAICVGLLVGIGCGALVGTIVSRFAVPAFVATLG 146 Query: 148 SYNIAIGVATTLSSGRPVQGVPAPFSQIFYGGSVFGIPAAIAITVGVGAVLHWTLTRTVF 207 + A G+ G+PV + F I G ++ G+P + + V V W L R+ F Sbjct: 147 MLSAARGLTLIYGGGKPVPALVPDFRWIGTG-NILGVPVPVILLAIVFLVSWWILNRSRF 205 Query: 208 GRSLYLIGTN-------------------------XALGAIMMTARTGSGEPNLGGALSL 242 GR +Y +G N L ++++ARTGS P G + L Sbjct: 206 GRYIYAVGGNPHAANTSGINISRVRFSVYVISGGLAGLAGMILSARTGSALPQAGISYEL 265 Query: 243 QAIAGAVVGGTSLAGGRGGVGTAVLGALFITILSNGMNLTRIDGYVQMVVLGAIVIVGVL 302 AIA V+GGTSL+GG G + ++GAL I +++NG++L I Y Q V+ GA+++ V+ Sbjct: 266 DAIAAVVIGGTSLSGGIGRITGTLIGALIIGVMNNGLDLMGIQSYYQQVLKGALIVGAVM 325 Query: 303 LDRLRLE 309 LD+ R + Sbjct: 326 LDQKRSQ 332 >mll1013 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Mlo Mesorhizobium loti Length = 331 Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 107/319 (33%), Positives = 163/319 (51%), Gaps = 42/319 (13%) Query: 25 WSAALPVALVALLLGFAAVDRGVLSPA-----NLLNIAQQASYLALFAMAQTVVILTRGF 79 W+ +L + V ++L AV LSP+ N+LN+ +Q + + ++ T VILTRG Sbjct: 24 WAQSLGLLWVLIVLCAFAV---YLSPSFIQTGNMLNVGRQVALFGIVSVGMTFVILTRGI 80 Query: 80 DLALGPTVSMVSVGTALAMAGATASGHGTGSVLLAGLAAGFLLGIACGLFNGVVIALLGV 139 DL++G V +V+V TAL ++ +G + + A +G G NG + G+ Sbjct: 81 DLSVGSIVGVVAVATALMLS--------SGVPIPLAMIAALGMGAVFGAINGAGVVFFGM 132 Query: 140 NPFVATLGSYNIAIGVATTLSSGRPVQGVPAPFSQIFYG-GSVFGIPAAIAITVGVGAVL 198 PF+ TLG+ + G+A T+++G P A + + G G +FGIP I I V + AV Sbjct: 133 PPFIMTLGTLVMGRGIAMTIANGEPKTLGDASDAFSYLGSGFLFGIPVPIWIFVAIAAVA 192 Query: 199 HWTLTRTVFGRSLYLIGTNX-------------------------ALGAIMMTARTGSGE 233 L T FGR +Y +G+N AL A++ +R GE Sbjct: 193 FVVLRHTPFGRQIYAVGSNTEAARLAGINVPRVLMSVYAISGVLSALTALVFVSRLTVGE 252 Query: 234 PNLGGALSLQAIAGAVVGGTSLAGGRGGVGTAVLGALFITILSNGMNLTRIDGYVQMVVL 293 P G L L+AI+ V+GGTSL GG GGV V+GA I +++N +NL I + Q +V Sbjct: 253 PTAGTNLELEAISIVVIGGTSLFGGEGGVIGTVIGAAIIAVMANILNLLGISPFTQQIVK 312 Query: 294 GAIVIVGVLLDRLRLERRQ 312 GAI+I V+ + R +RR Sbjct: 313 GAIIIAAVMFEVYRHKRRS 331