BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0048.p         (205 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll4881 [C] COG1319 Aerobic-type carbon monoxide dehydrogenase, ...    70   3e-12
BMEI1576 [F] COG4630 Xanthine dehydrogenase, iron-sulfur cluster...    62   9e-10
SMb21011 [F] COG4630 Xanthine dehydrogenase, iron-sulfur cluster...    60   2e-09

>mll4881 [C] COG1319 Aerobic-type carbon monoxide dehydrogenase, middle
           subunit CoxM/CutM homologs Mlo Mesorhizobium loti
          Length = 319

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 9/208 (4%)

Query: 1   MRHSQRPWPIMRNSRSXADARSANPAIRAMATIGGNLATSEFAAADCVPALLCLEAQVEM 60
           +RH   P P   ++   A     +P I+ +A++ GNL  +   AAD VP LL L+A+VE+
Sbjct: 107 IRH---PLPPAFDALKQAAREVGSPQIQNVASVAGNLCNAS-PAADGVPGLLVLDAEVEL 162

Query: 61  SARDGRERIGLAHFL--KIRSSLPPGHLVTRIILPR--AARRSAHARLPLRKSGDYPVAI 116
            +      + L  F+    R++L PG +VT I +P+  AA  SA  +L  R+     +A+
Sbjct: 163 RSAAATRHLPLPDFILGNRRTALRPGEMVTAIRVPKMAAAGASAFVKLGARRYLVISIAM 222

Query: 117 VSLSVSIDAAGRVQAARVAVGSVEPVARRWERLEAALIGRPLDAAEAAQTAAALADEFVG 176
           V+  + I+  GRV  A +AVGS   VA+R   +E AL+G   D    +   +A   E   
Sbjct: 223 VAARLVIEN-GRVAEAAIAVGSCSAVAKRLGGVEEALLGLLRDGELVSAIQSAPMIELSP 281

Query: 177 RDSVDAPAWYRVSVLPGLVRRAAIAALG 204
              V   A YR+  +  +V RA + A G
Sbjct: 282 IADVRGSAEYRLDAVREIVARAVLTAAG 309


>BMEI1576 [F] COG4630 Xanthine dehydrogenase, iron-sulfur cluster and
           FAD-binding subunit A Bme Brucella melitensis
          Length = 519

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 5/189 (2%)

Query: 21  RSANPAIRAMATIGGNLATSEFAAADCVPALLCLEAQVEMSARDGRERIGLAHFL--KIR 78
           R     +R M TIGGN+A       D  P L+ L A + +     R  I L  F     +
Sbjct: 320 RIGGEQVRNMGTIGGNIANGS-PIGDTPPPLIALGATLTLRKGAERRTIALEDFFIAYGK 378

Query: 79  SSLPPGHLV--TRIILPRAARRSAHARLPLRKSGDYPVAIVSLSVSIDAAGRVQAARVAV 136
                G  V    + LP    R A  ++  R+  D   ++ +  + +DAAG V   R+A 
Sbjct: 379 QDRGAGEFVEAVHVPLPGEGSRFAAYKVSKRREEDITASLGAFHLMLDAAGNVAHIRIAY 438

Query: 137 GSVEPVARRWERLEAALIGRPLDAAEAAQTAAALADEFVGRDSVDAPAWYRVSVLPGLVR 196
           G +    +R   +E AL+G+P   A       A A ++     + A A YR+ V   ++R
Sbjct: 439 GGMAATPKRAHAVETALMGKPWTEATVEAALEAYAQDYTPLTDMRATAEYRLLVARNMLR 498

Query: 197 RAAIAALGS 205
           R  +   GS
Sbjct: 499 RFYLETTGS 507


>SMb21011 [F] COG4630 Xanthine dehydrogenase, iron-sulfur cluster and
           FAD-binding subunit A Sme Sinorhizobium meliloti
          Length = 495

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 6/188 (3%)

Query: 21  RSANPAIRAMATIGGNLATSEFAAADCVPALLCLEAQVEMSARDGRERIGLAHFL--KIR 78
           R     +R M TIGGN+A       D  P L+ L A V + ++DG+  + L  F     +
Sbjct: 298 RIGGDQVRNMGTIGGNIANGS-PIGDSPPPLIVLGATVTLRSKDGQRTLPLEDFFIAYGK 356

Query: 79  SSLPPGHLVTRIILPR--AARRSAHARLPLRKSGDYPVAIVSLSVSIDAAGRVQAARVAV 136
               PG  V  + +P   A  R A  ++  R+  D    + +  +S+D   RV+ AR+A 
Sbjct: 357 QDRRPGEFVESLFVPALPADERFAAYKISKRRDEDISALLGAFRISLDG-DRVKTARIAF 415

Query: 137 GSVEPVARRWERLEAALIGRPLDAAEAAQTAAALADEFVGRDSVDAPAWYRVSVLPGLVR 196
           G +    +R + +EAALIG+           AA   ++       A   YR+     L+ 
Sbjct: 416 GGMAATPKRAKTVEAALIGQAWTEETVRTAQAAFETDYQPITDWRATGAYRMLAAKNLLM 475

Query: 197 RAAIAALG 204
           R  + ++G
Sbjct: 476 RFFLESVG 483