BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0042.p (282 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM4187 [K] COG1414 Transcriptional regulator Sty Salmonella typ... 211 1e-54 iclR [K] COG1414 Transcriptional regulator Eco Escherichia coli K12 210 2e-54 ZiclR [K] COG1414 Transcriptional regulator EcZ Escherichia coli... 210 2e-54 ECs4936 [K] COG1414 Transcriptional regulator Ecs Escherichia co... 210 2e-54 mll0250 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium ... 200 3e-51 >STM4187 [K] COG1414 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 274 Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 104/253 (41%), Positives = 164/253 (64%), Gaps = 2/253 (0%) Query: 26 GGVQSVDRAMQILETLAEDDEGYRLTDLAIRTGLSPSTVHRLLTTLENRRFVQFDREESK 85 G VQS+ R +++LE +AE + LT+LA + GL ST HRLLTT++ + FV+ E Sbjct: 22 GQVQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGH 81 Query: 86 WHIGAQSFVVGSTFVRRRNFAAQALPYLRKLRDQTRETANLAVVD--DESIIVVSRIESR 143 W +GA +F+VGS+F++ RN A P LRKL + + ET NLAV+D D I++ +++ Sbjct: 82 WAVGAHAFIVGSSFLQSRNLLAIVHPILRKLMEDSGETVNLAVLDQSDHQAIIIDQVQCT 141 Query: 144 EIMRSLTKVGGRVAMIASGVGKAVLATYSDADVNAIIRRQGMPRLTEKSIVRPGELFKEL 203 ++MR +GG++ M ASG GKA L+ S+ V +++ R+G+ T ++V P L +L Sbjct: 142 QLMRMSAPIGGKLPMHASGAGKAFLSQLSEEQVTSLLHRKGLHAYTHATLVSPLHLKDDL 201 Query: 204 EIVRRQGYAVDDEEARLGLRCVAAVVFNDCNEPYAAISVSGMADRLTNERLPEIGTIVHR 263 R++GY+ DDEE LGLRCVA+ ++++ EP+AA+S+SG R+T++R+ E+G +V + Sbjct: 202 AQTRKRGYSFDDEEHALGLRCVASCIYDEHREPFAALSISGPCSRITDDRVTELGAMVIK 261 Query: 264 IAAELTAELRGNR 276 A E+T G R Sbjct: 262 AAKEVTLAYGGTR 274 >iclR [K] COG1414 Transcriptional regulator Eco Escherichia coli K12 Length = 287 Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 106/253 (41%), Positives = 162/253 (64%), Gaps = 2/253 (0%) Query: 26 GGVQSVDRAMQILETLAEDDEGYRLTDLAIRTGLSPSTVHRLLTTLENRRFVQFDREESK 85 G VQS+ R +++LE +AE + LT+LA + GL ST HRLLTT++ + FV+ E Sbjct: 35 GQVQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGH 94 Query: 86 WHIGAQSFVVGSTFVRRRNFAAQALPYLRKLRDQTRETANLAVVD--DESIIVVSRIESR 143 W IGA +F+VGS+F++ RN A P LR L +++ ET N+AV+D D I++ +++ Sbjct: 95 WAIGAHAFMVGSSFLQSRNLLAIVHPILRNLMEESGETVNMAVLDQSDHEAIIIDQVQCT 154 Query: 144 EIMRSLTKVGGRVAMIASGVGKAVLATYSDADVNAIIRRQGMPRLTEKSIVRPGELFKEL 203 +MR +GG++ M ASG GKA LA S+ V ++ R+G+ T ++V P L ++L Sbjct: 155 HLMRMSAPIGGKLPMHASGAGKAFLAQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDL 214 Query: 204 EIVRRQGYAVDDEEARLGLRCVAAVVFNDCNEPYAAISVSGMADRLTNERLPEIGTIVHR 263 R++GY+ DDEE LGLRC+AA +F++ EP+AAIS+SG R+T++R+ E G +V + Sbjct: 215 AQTRKRGYSFDDEEHALGLRCLAACIFDEHREPFAAISISGPISRITDDRVTEFGAMVIK 274 Query: 264 IAAELTAELRGNR 276 A E+T G R Sbjct: 275 AAKEVTLAYGGMR 287 >ZiclR [K] COG1414 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 287 Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 106/253 (41%), Positives = 162/253 (64%), Gaps = 2/253 (0%) Query: 26 GGVQSVDRAMQILETLAEDDEGYRLTDLAIRTGLSPSTVHRLLTTLENRRFVQFDREESK 85 G VQS+ R +++LE +AE + LT+LA + GL ST HRLLTT++ + FV+ E Sbjct: 35 GQVQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGH 94 Query: 86 WHIGAQSFVVGSTFVRRRNFAAQALPYLRKLRDQTRETANLAVVD--DESIIVVSRIESR 143 W IGA +F+VGS+F++ RN A P LR L +++ ET N+AV+D D I++ +++ Sbjct: 95 WAIGAHAFMVGSSFLQSRNLLAIVHPILRNLMEESGETVNMAVLDQSDHEAIIIDQVQCT 154 Query: 144 EIMRSLTKVGGRVAMIASGVGKAVLATYSDADVNAIIRRQGMPRLTEKSIVRPGELFKEL 203 +MR +GG++ M ASG GKA LA S+ V ++ R+G+ T ++V P L ++L Sbjct: 155 HLMRMSAPIGGKLPMHASGAGKAFLAQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDL 214 Query: 204 EIVRRQGYAVDDEEARLGLRCVAAVVFNDCNEPYAAISVSGMADRLTNERLPEIGTIVHR 263 R++GY+ DDEE LGLRC+AA +F++ EP+AAIS+SG R+T++R+ E G +V + Sbjct: 215 AQTRKRGYSFDDEEHALGLRCLAACIFDEHREPFAAISISGPISRITDDRVTEFGAMVIK 274 Query: 264 IAAELTAELRGNR 276 A E+T G R Sbjct: 275 AAKEVTLAYGGMR 287 >ECs4936 [K] COG1414 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 287 Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 106/253 (41%), Positives = 162/253 (64%), Gaps = 2/253 (0%) Query: 26 GGVQSVDRAMQILETLAEDDEGYRLTDLAIRTGLSPSTVHRLLTTLENRRFVQFDREESK 85 G VQS+ R +++LE +AE + LT+LA + GL ST HRLLTT++ + FV+ E Sbjct: 35 GQVQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGH 94 Query: 86 WHIGAQSFVVGSTFVRRRNFAAQALPYLRKLRDQTRETANLAVVD--DESIIVVSRIESR 143 W IGA +F+VGS+F++ RN A P LR L +++ ET N+AV+D D I++ +++ Sbjct: 95 WAIGAHAFMVGSSFLQSRNLLAIVHPILRNLMEESGETVNMAVLDQSDHEAIIIDQVQCT 154 Query: 144 EIMRSLTKVGGRVAMIASGVGKAVLATYSDADVNAIIRRQGMPRLTEKSIVRPGELFKEL 203 +MR +GG++ M ASG GKA LA S+ V ++ R+G+ T ++V P L ++L Sbjct: 155 HLMRMSAPIGGKLPMHASGAGKAFLAQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDL 214 Query: 204 EIVRRQGYAVDDEEARLGLRCVAAVVFNDCNEPYAAISVSGMADRLTNERLPEIGTIVHR 263 R++GY+ DDEE LGLRC+AA +F++ EP+AAIS+SG R+T++R+ E G +V + Sbjct: 215 AQTRKRGYSFDDEEHALGLRCLAACIFDEHREPFAAISISGPISRITDDRVTEFGAMVIK 274 Query: 264 IAAELTAELRGNR 276 A E+T G R Sbjct: 275 AAKEVTLAYGGMR 287 >mll0250 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium loti Length = 273 Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 101/247 (40%), Positives = 163/247 (65%), Gaps = 1/247 (0%) Query: 28 VQSVDRAMQILETLAEDDEGYRLTDLAIRTGLSPSTVHRLLTTLENRRFVQFDREESKWH 87 VQS+DRA++IL +AE G L++++ ++GL+ ST +R+LTTLEN V+FD + W Sbjct: 24 VQSLDRALRILAIVAEGS-GLSLSEISAQSGLAASTAYRMLTTLENHGMVEFDTSDQLWS 82 Query: 88 IGAQSFVVGSTFVRRRNFAAQALPYLRKLRDQTRETANLAVVDDESIIVVSRIESREIMR 147 IG +++ +G+ F+RRR +A +++L ++T ETANL V +D+ ++ VS++E+ + +R Sbjct: 83 IGVETYRMGAAFLRRRKLVDRARIVMQELMERTGETANLGVAEDDCVVFVSQVETHQAIR 142 Query: 148 SLTKVGGRVAMIASGVGKAVLATYSDADVNAIIRRQGMPRLTEKSIVRPGELFKELEIVR 207 + + G R ASG+GKAVLA V I+R+ G+ R T++++ L +L +++ Sbjct: 143 AFFRPGTRSPFHASGIGKAVLAHLEPERVGTILRKAGLQRFTDRTLSEIPALAHDLAVIK 202 Query: 208 RQGYAVDDEEARLGLRCVAAVVFNDCNEPYAAISVSGMADRLTNERLPEIGTIVHRIAAE 267 ++G++VDDEE G+RCVAA +FN+ EP +SVSG R+T ERL EIG +V AAE Sbjct: 203 QRGWSVDDEERHPGMRCVAAAIFNEFGEPIGGVSVSGPTVRVTPERLAEIGPMVRSAAAE 262 Query: 268 LTAELRG 274 +T + G Sbjct: 263 VTRMIGG 269