BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0028.p         (270 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yqaJ [L] COG5377 Phage-related protein, predicted endonucleas...    79   9e-15
BH3544 [L] COG5377 Phage-related protein, predicted endonuclease...    64   3e-10
lin2414 [L] COG5377 Phage-related protein, predicted endonucleas...    60   4e-09

>BS_yqaJ [L] COG5377 Phage-related protein, predicted endonuclease Bsu
           Bacillus subtilis
          Length = 319

 Score = 79.3 bits (194), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 118/249 (47%), Gaps = 17/249 (6%)

Query: 6   DRRTFIGGSDARIIMGDDE-GNLIRLWQEKRGETEPVDLSQNLIVQLGKVTEDLNRTWYE 64
           +RR  IGGSDA II+G ++      LW +K G+  PV  SQ+     G + ED+    +E
Sbjct: 23  ERRKGIGGSDASIILGLNKWKTPFELWLDKTGQV-PVSESQSEAAYFGSLLEDIVAKEFE 81

Query: 65  RCTKHRIKDIQRRVRHPVHKWMAATLDGMIEDTGAVFEAKFMLPWSFAE---EAAVEKHM 121
             +  +++  +  +RHP + ++ A +D MI    A+ E K    ++  E   E   E ++
Sbjct: 82  IRSGKKVRRKKAILRHPEYNFILANVDRMIVGEKAILECKTTSAYNLKEWEDEEIPESYI 141

Query: 122 AQLQHNMWVVSA--RNSVLSIITGGGKWVEITICADPLYQHLLLTAERKFWR-CVQTGEQ 178
            Q+QH + V+    R +  +++ GG K+V   I  D     ++  AE +FW   V  G+ 
Sbjct: 142 VQVQHYLGVLGPEYRKAYFAVLIGGNKFVWKEIERDDELIDMIFKAEIEFWNDKVLGGQA 201

Query: 179 PTLFGVETPRPRL-------EAVRLVDMSSSNHWAELAACYLRTRVAHGDHEAAKSELKK 231
           P L G       L       E  + +D++++N   E    YL  +    + ++   EL+ 
Sbjct: 202 PALDGSSAAEEYLKKRYAETENNKAIDLTAANR--ERIQQYLLIKEQISELQSQAKELEN 259

Query: 232 LLPEDAKEA 240
            +  + K+A
Sbjct: 260 QIKHEMKDA 268


>BH3544 [L] COG5377 Phage-related protein, predicted endonuclease Bha
           Bacillus halodurans
          Length = 320

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 17/249 (6%)

Query: 7   RRTFIGGSDARIIMGDDE-GNLIRLWQEKRGETEPVDLSQNLIVQLGKVTEDLNRTWYER 65
           R + +GGSDA  ++G ++      LW EK G+ EPV  S +     G + ED+    + R
Sbjct: 22  RTSGLGGSDAATVLGLNKWRTPFELWLEKTGQVEPVS-SDSEAAYFGNLLEDVVANEFAR 80

Query: 66  CTKHRIKDIQRRVRHPVHKWMAATLDGMIEDTGAVFEAKF---MLPWSFAEEAAVEKHMA 122
            T  +++     +RHP + ++ A +D ++    AV E K     +   + ++   ++++ 
Sbjct: 81  RTGKKVRRRNAILRHPKYDFIRANVDRLVVGEKAVLECKTTTAFMAQEWKDDQIPDQYII 140

Query: 123 QLQHNMWVVSA--RNSVLSIITGGGKWVEITICADPLYQHLLLTAERKFWRC-VQTGEQP 179
           Q+QH + V+    +    +++ GG K+V   I  D     ++  AE  FW   V     P
Sbjct: 141 QMQHYLGVLGPEYKKGYFAVLIGGQKFVWKEIERDDDLIQMIFEAEIDFWNNHVLANVPP 200

Query: 180 TLFGVETPRPRL-------EAVRLVDMSSSNHWAELAACYLRTRVAHGDHEAAKSELKKL 232
            L G       L       +A + VD+  S  + E     +  +    + E  K E++  
Sbjct: 201 ALDGSSAAEKFLAERYAKADAEKSVDLDRS--YKEKLDRLVELKRIISEFERDKKEIENE 258

Query: 233 LPEDAKEAT 241
           L  + KEAT
Sbjct: 259 LKNELKEAT 267


>lin2414 [L] COG5377 Phage-related protein, predicted endonuclease Lin
           Listeria innocua
          Length = 319

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 6/182 (3%)

Query: 7   RRTFIGGSDARIIMGDDE-GNLIRLWQEKRGETEPVDLSQNLIVQLGKVTEDLNRTWYER 65
           RR  IGGSDA IIMG ++      LW +K  +  P D S       G   E++    +E+
Sbjct: 27  RRLGIGGSDAGIIMGLNQYKTAFELWLDKTDQVLP-DESAGEAAYWGNQMEEVVAKEFEK 85

Query: 66  CTKHRIKDIQRRVRHPVHKWMAATLDGMIEDTGAVFEAKFMLPWSFAEEAAVE---KHMA 122
            T  +++      +HP H +M A +D  +    A+ E K    +   E  A E    ++ 
Sbjct: 86  RTGKKVRRSNMMYQHPEHDFMLANVDRFVVGEDAILECKTASAYLAKEWEADEVPATYLV 145

Query: 123 QLQHNMWVVSARNSVLSIITGGGKWVEITICADPLYQHLLLTAERKFWRCVQTGE-QPTL 181
           Q+QH + V     + ++++ GG K++   I  D    + ++  E  FW     G   P L
Sbjct: 146 QIQHYLAVTGKSKAYVAVLIGGNKFIWKEIERDDELINQIIAFELDFWETNVKGHVAPAL 205

Query: 182 FG 183
            G
Sbjct: 206 DG 207