BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0009.p (289 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc380 [U] COG3745 Flp pilus assembly protein CpaB Atu Agrobacte... 95 2e-19 SMc04112 [U] COG3745 Flp pilus assembly protein CpaB Sme Sinorhi... 94 4e-19 SMa1576 [U] COG3745 Flp pilus assembly protein CpaB Sme Sinorhiz... 86 1e-16 CC2946 Non COG 84 3e-16 mlr5595 [U] COG3745 Flp pilus assembly protein CpaB Mlo Mesorhiz... 81 2e-15 >AGc380 [U] COG3745 Flp pilus assembly protein CpaB Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 128/242 (52%), Gaps = 25/242 (10%) Query: 6 RISIIVVLLLATTAFGLIAFNLNQPKQAPVAVADGAPAPAAAPATVGYFVAARPLPRGTL 65 RI I+ V L+A GL+A ++ KQ V + A TV +++ LP G+ Sbjct: 5 RIVILSVALVAAGLAGLVAMQISGAKQ----VIEKAETIIQKEPTVNVLISSVNLPVGS- 59 Query: 66 ARDEDFAVRTSAPESVPAGAILETPASKAGLP-------GALVRKFVDAGSPVTLQDILR 118 R D ++R + P G ++++ ++A P G +VR + G P+ + ++ Sbjct: 60 -RLNDSSMRWTP---WPQGNVVDSFITQAKRPDAITELAGTVVRLPLFEGEPIRPEKVVD 115 Query: 119 PKDRGFLASVLAPDSRAISIKVDEESGVSGLIRPGDYVDVLLTQVFEKANPARRALSETV 178 R ++S+L RA++ ++ +G G + P D VDV++ + E N L+E V Sbjct: 116 SSTR-IMSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGENGN----FLTENV 170 Query: 179 LRNVRVIAIDQEIVQGGRGISGVTGKQAQTVSLELGPDQVKKITVAKQLGT-LSLSVRAA 237 L NVRV+AIDQ+I +G GI+ V G T +LEL P+Q K ITVA+Q+ L+L++R+ Sbjct: 171 LNNVRVLAIDQQIKEGEDGIAAVVGA---TATLELTPEQAKIITVAQQMADRLTLALRSV 227 Query: 238 VD 239 D Sbjct: 228 AD 229 >SMc04112 [U] COG3745 Flp pilus assembly protein CpaB Sme Sinorhizobium meliloti Length = 269 Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 28/244 (11%) Query: 5 LRISIIVVLLLATTAFGLIAFNLNQPKQAPVAVADGAPAPAAAPA------TVGYFVAAR 58 +RI I+ V + + GL+A L + APAP A T+ VA + Sbjct: 4 VRIIILAVAIGSAAMAGLLAMKLTR-----------APAPQTAEPVIEQAPTINVLVAGK 52 Query: 59 PLPRGTLARDEDFAVRTSAPESVPAGAILET--PASKAGLPGALVRKFVDAGSPVTLQDI 116 LP G+ + + + V G I E PA+ L GA+VR + G PV + I Sbjct: 53 SLPVGSRLGADSIHWKAWPKDGVAEGMITEENRPAAVEDLAGAVVRLPIFTGEPVRQEKI 112 Query: 117 LRPKDRGFLASVLAPDSRAISIKVDEESGVSGLIRPGDYVDVLLTQVFEKANPARRALSE 176 +R ++S+L RA++ ++ +G G I P D VDV++ + + L+E Sbjct: 113 ADASNR-IMSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMV----RKSDGDLYLTE 167 Query: 177 TVLRNVRVIAIDQEIVQGGRGISGVTGKQAQTVSLELGPDQVKKITVAKQLGT-LSLSVR 235 TVL NVRV+AIDQ+I + G V G T +LEL PDQ K +TVA+Q+ +SL++R Sbjct: 168 TVLSNVRVLAIDQQIEEKEDGSKAVVGT---TATLELTPDQSKVMTVAQQMADRISLALR 224 Query: 236 AAVD 239 + D Sbjct: 225 SVAD 228 >SMa1576 [U] COG3745 Flp pilus assembly protein CpaB Sme Sinorhizobium meliloti Length = 263 Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 118/248 (47%), Gaps = 37/248 (14%) Query: 10 IVVLLLATTAFGLIAF-NLNQPKQAPVAVADGAPAPAAAPATVGYFVAARPLPRGTLARD 68 IV+LLLA + G ++ L Q V VA+ P+ VAA L RG + + Sbjct: 4 IVILLLALASGGAASWLALGTGDQRAVEVAEVQETPSQE-----VLVAAAELKRGAVIEE 58 Query: 69 ED-------------FAVRTSAPESVPAGAILETPASKAGLPGALVRKFVDAGSPVTLQD 115 F R+S P++ A L G+L AG P+ D Sbjct: 59 NQLRWQPWEGEIPPVFISRSSRPDATTA------------LKGSLALSGFVAGEPIR-DD 105 Query: 116 ILRPKDRGFLASVLAPDSRAISIKVDEESGVSGLIRPGDYVDVLLTQVFEKAN-PARRAL 174 L G+L+S+L RAI+++V ES G I P D+VDV+ T A+ A + + Sbjct: 106 KLAQGGTGYLSSLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDASGDAGKVV 165 Query: 175 SETVLRNVRVIAIDQEIVQGGRGISGVTGKQAQTVSLELGPDQVKKITVAKQLGTLSLSV 234 S +L N+RV+A+DQ + Q G S V GK T +LE+ P+Q+ + A+ GT+SL++ Sbjct: 166 SRAILSNIRVLAVDQTVSQASDGAS-VIGK---TATLEVDPEQISAVAAAEASGTVSLAL 221 Query: 235 RAAVDQWD 242 RA D + Sbjct: 222 RAITDNHE 229 >CC2946 Non COG Length = 297 Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 123/267 (46%), Gaps = 38/267 (14%) Query: 7 ISIIVVLLLATTAFGLI-----AFNLNQPKQAPVAVADGAPAPAAAPATVGYFVAARPLP 61 + +++VL+ A +A GL A K + A G PA P T VA R LP Sbjct: 4 VRLLIVLIAAVSAIGLAVVLQRALGGAPAKPTGLVEAPGGPAAPGKPMTQ-VLVAKRDLP 62 Query: 62 RGTLARDEDFAVRTSAPESVPAGAILE--TPASKAG------------------------ 95 GT D + +S+ A I P + G Sbjct: 63 VGTRLVATDVGWQAWPSDSINAAFITNGSAPVTPDGKVEAAKAVVAATADQMIGGDPAKI 122 Query: 96 LPGALVRKFVDAGSPVTLQDILRPKDRGFLASVLAPDSRAISIKVDEESGVSGLIRPGDY 155 + GA+VR + G P+T + I+R + G+L+ VL P RA+S+ V ++ V G I PGD Sbjct: 123 VEGAIVRDPILIGEPITPRKIVRGGEGGYLSVVLTPGKRAMSVPVTSDTAVGGFILPGDR 182 Query: 156 VDVLLTQVFEKANP--ARRALSETVLRNVRVIAIDQEIVQGGRGISGVTGKQAQTVSLEL 213 VDVL T+ A + ++ETVL+N+RV+A+DQ S V A T +LE+ Sbjct: 183 VDVLSTRDAPAAGDQGGKVMIAETVLQNIRVLALDQATAAEKDAKSIV----AATATLEV 238 Query: 214 GPDQVKKITVAKQLGTLSLSVRAAVDQ 240 GP + + + AK G ++L++RA D Sbjct: 239 GPVEAEALARAKAGGPITLALRAYTDM 265 >mlr5595 [U] COG3745 Flp pilus assembly protein CpaB Mlo Mesorhizobium loti Length = 271 Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 5/155 (3%) Query: 90 PASKAGLPGALVRKFVDAGSPVTLQDILRPKDRGFLASVLAPDSRAISIKVDEESGVSGL 149 P + L G++ R + AG PV ++ + + F++S+L RA++ + ++ G Sbjct: 88 PDALEKLKGSIARVPMYAGEPVRRSKLI-GEGQSFMSSILPSGMRAVATTISADTSAGGF 146 Query: 150 IRPGDYVDVLLTQVFEKANPARRALSETVLRNVRVIAIDQEIVQGGRGISGVTGKQAQTV 209 I P D+VDV++T+ + + + +ET+L+N+RV+AIDQ I + G G QT Sbjct: 147 ILPNDFVDVIMTRRADANSGSTGFNTETILKNIRVLAIDQTIQEDEEGKKTRVG---QTA 203 Query: 210 SLELGPDQVKKITVAKQLGT-LSLSVRAAVDQWDK 243 +LEL P Q + ITVA+Q+ L+L++RA D +K Sbjct: 204 TLELTPKQAEIITVAQQMADRLTLALRAVADTQEK 238