BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0029.p (470 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20164 [T] COG0642 Signal transduction histidine kinase Sme Si... 202 1e-51 mlr1132_1 [T] COG0642 Signal transduction histidine kinase Mlo M... 192 1e-48 SMc02249_2 [T] COG0642 Signal transduction histidine kinase Sme ... 170 6e-42 AGc932_2 [T] COG0642 Signal transduction histidine kinase Atu Ag... 166 1e-40 XF0973_1 [T] COG0642 Signal transduction histidine kinase Xfa Xy... 164 3e-40 >SMb20164 [T] COG0642 Signal transduction histidine kinase Sme Sinorhizobium meliloti Length = 747 Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 185/346 (53%), Gaps = 10/346 (2%) Query: 118 KAARLTLSALTEMATGSKNVALTDQIDRSLATLEDMLRTLLDISKLDAGVLRPEFGPVAI 177 AA+L LS LT+ + ++ RS ++E +L+ LLDIS+LD+ + Sbjct: 401 NAAKLYLSMLTDKVGQPGTEEVVRRLKRSFTSIESLLQALLDISRLDSSGAEFNVTSFNL 460 Query: 178 ASLFEPLEQEFVATAAKRNLGFRIMPSSAVVRSDPLMLRRILQNLVANALRYTQRGSVLM 237 +L + + ++ A +R + RI+PSS V SD L R +QNLV NA++YT+RG VL+ Sbjct: 461 GNLLQGVAEDLAPLATERGIDLRIVPSSRWVSSDQRYLMRCVQNLVVNAIQYTERGRVLV 520 Query: 238 GCRARGDDICIEVHDTGPGIPEAQREAIFVEFQRGETSAGDKAGIGLGLSIVRRFADLLG 297 GCR GD + IEV DTG GI E R IF EF R + A G+GLGLSIV R L Sbjct: 521 GCRLTGDAVRIEVWDTGVGISEEDRTRIFKEFTRA-SGAAKGPGMGLGLSIVERACRHLD 579 Query: 298 HDIRLSSRAGKGSVFSVTVPRTLDPVAIPVREQASVDYRYGGMEGAK----ILLIENDLS 353 H IRL+S+ G+GSVFS+ V P+A P S D R M ++++END Sbjct: 580 HPIRLASQPGRGSVFSIEV-----PLAAPGHASVSEDPRMEPMLDGSLDLIVMIVENDAD 634 Query: 354 SAEGLAHLLEKWGCDVAVTISKTEALERIHALDGIPDAIIADLHLDNGETGIQAVDVIRG 413 + +LE WG V S +A + + PD ++ D LD+ + GI+ + +R Sbjct: 635 ELHAMTQVLESWGASVLAADSTADAAALMQEIGTAPDILLVDYQLDDEDNGIETIHTLRA 694 Query: 414 AINAKVPAIIVTADYSAKAASDVSAFGHELLKKPIKPAEMRSLLSF 459 A++PAII++A+ + + +L KP++ +R+L+ + Sbjct: 695 LAGAEIPAIIISANRQRQFLQLCNEMSFAVLTKPVQLVRLRALIDW 740 >mlr1132_1 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium loti Length = 318 Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 107/203 (52%), Positives = 140/203 (68%), Gaps = 3/203 (1%) Query: 118 KAARLTLSALTEMATGSKNVALTDQIDRSLATLEDMLRTLLDISKLDAGVLRPEFGPVAI 177 AA L++SAL E+ T + L Q++RSL T+ED+LRTLLDISKLDAGV+ P+ G V++ Sbjct: 98 NAAHLSVSALAELQTSDEGRKLVRQVERSLETMEDLLRTLLDISKLDAGVVHPDIGDVSL 157 Query: 178 ASLFEPLEQEFVATAAKRNLGFRIMPSSAVVRSDPLMLRRILQNLVANALRYTQRGSVLM 237 +LF L +F A + L + P +AVVRSD +LRRILQN+++NAL YT+ G VL+ Sbjct: 158 EALFSSLRSDFQPVAEMKRLSLKFRPVNAVVRSDRTLLRRILQNILSNALGYTRSGGVLV 217 Query: 238 GCRARGDDICIEVHDTGPGIPEAQREAIFVEFQRGETSAG---DKAGIGLGLSIVRRFAD 294 G R RGD I I+V DTG GIPE QREA+F EF RG A D G+GLGL+IVRR A Sbjct: 218 GTRHRGDTIRIDVADTGCGIPEDQREAVFEEFHRGTLPANAGLDGGGLGLGLAIVRRMAG 277 Query: 295 LLGHDIRLSSRAGKGSVFSVTVP 317 LGH + SS+ G+G++F + VP Sbjct: 278 ALGHPVTFSSKVGRGTIFHIDVP 300 >SMc02249_2 [T] COG0642 Signal transduction histidine kinase Sme Sinorhizobium meliloti Length = 424 Score = 170 bits (431), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 95/210 (45%), Positives = 127/210 (60%), Gaps = 5/210 (2%) Query: 113 AGGHT-----KAARLTLSALTEMATGSKNVALTDQIDRSLATLEDMLRTLLDISKLDAGV 167 A GH AARL S+L E S N AL ID SL ++E +L +LDIS+LD G Sbjct: 181 AAGHDILQPLNAARLYSSSLVERLGDSDNRALVQNIDSSLESVEAILGAVLDISRLDTGA 240 Query: 168 LRPEFGPVAIASLFEPLEQEFVATAAKRNLGFRIMPSSAVVRSDPLMLRRILQNLVANAL 227 ++P V + L +E +F A +++ IMP+S RSDP +LRR++QNLV+NA+ Sbjct: 241 MKPRLQSVPLDELLRRIETDFAPMARAKDIELVIMPTSLAARSDPNLLRRLVQNLVSNAI 300 Query: 228 RYTQRGSVLMGCRARGDDICIEVHDTGPGIPEAQREAIFVEFQRGETSAGDKAGIGLGLS 287 +YT RG VL+G R G IEV D+G GIP ++ IF EF R E A +G+GLGLS Sbjct: 301 KYTLRGKVLVGVRRHGQTATIEVLDSGIGIPSSKFRTIFKEFARLEEGARTASGLGLGLS 360 Query: 288 IVRRFADLLGHDIRLSSRAGKGSVFSVTVP 317 IV R + +L H + L S+ GKG+ F VTVP Sbjct: 361 IVDRISRVLNHPVGLQSKPGKGTGFKVTVP 390 >AGc932_2 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 437 Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/217 (41%), Positives = 132/217 (60%), Gaps = 5/217 (2%) Query: 113 AGGHT-----KAARLTLSALTEMATGSKNVALTDQIDRSLATLEDMLRTLLDISKLDAGV 167 A GH AARL S+L E S L ID +L ++E +L +LDIS+LD G Sbjct: 202 AAGHDILQPLNAARLYSSSLVERLGASGESDLVHNIDSALESVETILGAVLDISRLDTGS 261 Query: 168 LRPEFGPVAIASLFEPLEQEFVATAAKRNLGFRIMPSSAVVRSDPLMLRRILQNLVANAL 227 ++ V + L + +E +F A ++NL +MP+S VRSDP +LRR++QNLV+NA+ Sbjct: 262 MKARMTSVPLNELLKRIETDFAPMAQEKNLDLVVMPTSLTVRSDPNLLRRLIQNLVSNAI 321 Query: 228 RYTQRGSVLMGCRARGDDICIEVHDTGPGIPEAQREAIFVEFQRGETSAGDKAGIGLGLS 287 +YT G V++G R RG ++ I+V D+G GIP ++ +F EF R + A +G+GLGLS Sbjct: 322 KYTLEGKVVVGARRRGGEVVIQVTDSGIGIPASKFRTVFKEFARLDEGAKTASGLGLGLS 381 Query: 288 IVRRFADLLGHDIRLSSRAGKGSVFSVTVPRTLDPVA 324 IV R + +L H ++L S GKG+ F + +PR D +A Sbjct: 382 IVDRLSRMLHHPVQLISTPGKGTTFRIHLPREADRLA 418 >XF0973_1 [T] COG0642 Signal transduction histidine kinase Xfa Xylella fastidiosa 9a5c Length = 395 Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 88/200 (44%), Positives = 125/200 (62%) Query: 118 KAARLTLSALTEMATGSKNVALTDQIDRSLATLEDMLRTLLDISKLDAGVLRPEFGPVAI 177 AAR+ ++ L + + + + + ID +L + +L +LLDIS+L++G L+ + A+ Sbjct: 196 NAARMFVAMLRKQLHDTDALRIANNIDGALIAEDAILSSLLDISRLESGTLKTQVHHFAL 255 Query: 178 ASLFEPLEQEFVATAAKRNLGFRIMPSSAVVRSDPLMLRRILQNLVANALRYTQRGSVLM 237 +L E L EF A R + + +PS A+V SD +LRRILQN ++NA+RYT RG VL+ Sbjct: 256 GTLLETLAGEFGILAQSRGITLKWVPSRAIVGSDETLLRRILQNFLSNAIRYTPRGRVLI 315 Query: 238 GCRARGDDICIEVHDTGPGIPEAQREAIFVEFQRGETSAGDKAGIGLGLSIVRRFADLLG 297 GCR G+ + IEVHD GPGIPE+ + IF EF+R + + G GLGL+IV R LL Sbjct: 316 GCRRHGNWLRIEVHDQGPGIPESLQSEIFEEFRRLDDGVVNDRGAGLGLAIVERIGRLLN 375 Query: 298 HDIRLSSRAGKGSVFSVTVP 317 H I L S G GS FSV+VP Sbjct: 376 HRIGLRSTLGHGSTFSVSVP 395