BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0027.p (225 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1133 [TK] COG2197 Response regulator containing a CheY-like r... 199 5e-51 mlr5684 [TK] COG2197 Response regulator containing a CheY-like r... 154 1e-37 SMc02248 [TK] COG2197 Response regulator containing a CheY-like ... 150 2e-36 XF0972 [TK] COG2197 Response regulator containing a CheY-like re... 147 2e-35 PA3604 [TK] COG2197 Response regulator containing a CheY-like re... 143 3e-34 >mll1133 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Mlo Mesorhizobium loti Length = 227 Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 101/206 (49%), Positives = 141/206 (68%) Query: 3 FLIIDDHPLFGEALGNAIRISHPDARIYEATSIKGALGILASEPNIDLALLDLLLPDVVG 62 FLIIDDHPLF EAL +A+++++P+ EA SI AL +LA DLALLDL +PDV G Sbjct: 10 FLIIDDHPLFREALHSAVQMAYPEVDTVEARSIAEALDLLADAKPFDLALLDLSMPDVHG 69 Query: 63 FSGFQKIRDRYPRLPIAIVSSEEDKHTIREALEMGAVGYLPKSTSLGELSQAIARVLSGS 122 F G ++R RYPRLP+ IVS E+ I EAL GA G++PKS +L+ AI V+ G+ Sbjct: 70 FDGLLQLRTRYPRLPVVIVSGHEEPRIISEALSYGAAGFIPKSARKSDLAAAIRSVMDGA 129 Query: 123 VSAPRDFVAVGALEQSETARTLRERIQKLTPQQIRVLHLIIRGLQNREIAAELKLAESTV 182 + P + A S + +R+ KLTPQQ+RVL ++ +GL N++IA EL++ E+TV Sbjct: 130 IYVPETYEGQPADADSIDRADMVQRLSKLTPQQLRVLQMLRQGLLNKQIAYELQVGETTV 189 Query: 183 KAHVTEILRKLKLFSRNKAIIELGKI 208 KAHV+EILRKL ++SR +A+IE+ K+ Sbjct: 190 KAHVSEILRKLNVYSRTQAVIEVSKL 215 >mlr5684 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Mlo Mesorhizobium loti Length = 219 Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 3 FLIIDDHPLFGEALGNAIRISHPDARIYEATSIKGALGILASEPNIDLALLDLLLPDVVG 62 F+I DDHPLF AL A+ A I+EA + A ++ + ++DL LLDL +P G Sbjct: 7 FVIADDHPLFRGALREALAGIGNVAAIHEAGDFESAKALVVANEDVDLVLLDLSMPGASG 66 Query: 63 FSGFQKIRDRYPRLPIAIVSSEEDKHTIREALEMGAVGYLPKSTSLGELSQAIARVLSGS 122 SG +R +P +P+ +VS+ +D TIR AL++GA G++ KS S+ E+ A+ VL+G Sbjct: 67 LSGLISLRGIHPAVPLIVVSAHDDPATIRRALDLGASGFISKSASMEEIRNAVQLVLAGD 126 Query: 123 VSAPRDFVAVGALEQSETARTLRERIQKLTPQQIRVLHLIIRGLQNREIAAELKLAESTV 182 ++AP V +G +E+ L +R+Q LTPQQ RVL ++ GL N++IA EL ++E+T+ Sbjct: 127 IAAPVG-VDLG-VERDPEISDLIKRLQALTPQQTRVLGMLAEGLLNKQIAYELGVSEATI 184 Query: 183 KAHVTEILRKLKLFSRNKAIIELGKI 208 KAHV+ IL+KL + SR +A+I L KI Sbjct: 185 KAHVSAILQKLGVDSRTQAVILLSKI 210 >SMc02248 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sme Sinorhizobium meliloti Length = 215 Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/208 (42%), Positives = 124/208 (59%), Gaps = 2/208 (0%) Query: 1 MGFLIIDDHPLFGEALGNAIRISHPDARIYEATSIKGALGILASEPNIDLALLDLLLPDV 60 M +I DDHPLF A+ A+ I EA A A P+ DL LLDL +P V Sbjct: 4 MTIIIADDHPLFRGAMRQALSGMAGAPAIVEAGDFAAARRAAADNPDADLMLLDLTMPGV 63 Query: 61 VGFSGFQKIRDRYPRLPIAIVSSEEDKHTIREALEMGAVGYLPKSTSLGELSQAIARVLS 120 G SG +R +P LP+ IVS+ +D TI AL++GA G+L KS + E+ + IA+V++ Sbjct: 64 SGLSGLIALRAEFPSLPVMIVSAHDDPATIHRALDLGAAGFLSKSAGIEEIREGIAKVMA 123 Query: 121 GSVSAPRDFVAVGALEQSETARTLRERIQKLTPQQIRVLHLIIRGLQNREIAAELKLAES 180 G V P + E E A L R+Q LTPQQ RVL ++ GL N++IA EL ++E+ Sbjct: 124 GEVFVPPGYDQNQEYE-PEVADLLH-RLQTLTPQQSRVLSMLAEGLLNKQIAYELGVSEA 181 Query: 181 TVKAHVTEILRKLKLFSRNKAIIELGKI 208 T+KAHV+ IL KL + SR +A+I+L K+ Sbjct: 182 TIKAHVSAILLKLNVDSRTQAVIQLSKL 209 >XF0972 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Xfa Xylella fastidiosa 9a5c Length = 210 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 119/203 (58%), Gaps = 5/203 (2%) Query: 1 MGFLIIDDHPLFGEALGNAIRISHPDARIYEATSIKGALGILASEPNIDLALLDLLLPDV 60 M L++DDHPLF A+ +R + D ++ +A+S L + P +L LLDL +P Sbjct: 4 MLILVVDDHPLFRNAVIQVLRENFQDTQVLDASSAATLRSALQAYPQTELVLLDLAMPGA 63 Query: 61 VGFSGFQKIRDRYPRLPIAIVSSEEDKHTIREALEMGAVGYLPKSTSLGELSQAIARVLS 120 GFS +R +P +P+ ++SS + IR A + GA G++PKS+ +++ +A VL Sbjct: 64 RGFSALLHVRGEHPDIPVVVISSNDHPRVIRRAQQFGAAGFIPKSSPPETITEVVAAVLD 123 Query: 121 GSVSAPRDFVAVGALEQSETARTLRERIQKLTPQQIRVLHLIIRGLQNREIAAELKLAES 180 G P V E SE+ L ++ +LTPQQ RVL + GL N++IA EL LAE+ Sbjct: 124 GGTWFPPMLV-----ECSESDAQLAVKLARLTPQQFRVLLCLADGLLNKQIAYELGLAEN 178 Query: 181 TVKAHVTEILRKLKLFSRNKAII 203 TVK HVT IL+KL+ +SR +A + Sbjct: 179 TVKVHVTAILKKLECYSRTQAAV 201 >PA3604 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 217 Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/206 (40%), Positives = 124/206 (60%), Gaps = 3/206 (1%) Query: 4 LIIDDHPLFGEALGNAIRIS-HPDARIYEATSIKGALGILASEPNIDLALLDLLLPDVVG 62 LI DDHPLF AL A+ + PD R+ EA SI L + + DL LLDL +P G Sbjct: 7 LIADDHPLFRSALHQALTLGLGPDVRLVEAASIAELEARLNEKADWDLVLLDLNMPGAYG 66 Query: 63 FSGFQKIRDRYPRLPIAIVSSEEDKHTIREALEMGAVGYLPKSTSLGELSQAIARVLSGS 122 FSG +R +YP++P+ ++S++E+ ++ + E GA G++PKS+ L L QA+ VL G Sbjct: 67 FSGLVLLRGQYPQVPVVMISAQEEAAVVQRSREFGASGFIPKSSPLETLQQAVRAVLDGD 126 Query: 123 VSAPRDFVAVGALEQSETARTLRERIQKLTPQQIRVLHLIIRGLQNREIAAELKLAESTV 182 P A AL + A + + LTPQQ RVL ++ GL N++IA +L ++E+TV Sbjct: 127 TWWPPQDAAAEALSEEAKAAS--AGLASLTPQQFRVLTMVCEGLLNKQIAYDLNVSEATV 184 Query: 183 KAHVTEILRKLKLFSRNKAIIELGKI 208 KAHVT I RKL + +R +A + L ++ Sbjct: 185 KAHVTAIFRKLNVRTRTQAALLLQQM 210