BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0058.0003.p         (216 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll2368 [M] COG2885 Outer membrane protein and related peptidogl...    71   1e-12
PA1777 [M] COG2885 Outer membrane protein and related peptidogly...    68   1e-11
AGc3445_2 [M] COG2885 Outer membrane protein and related peptido...    65   8e-11
mlr2412_2 [M] COG2885 Outer membrane protein and related peptido...    65   8e-11
SMc00141_2 [M] COG2885 Outer membrane protein and related peptid...    65   2e-10

>mll2368 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Mlo
           Mesorhizobium loti
          Length = 167

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 6/111 (5%)

Query: 97  KPKIDLEINFDYNSADISAKSLPSVQALGRALTNQDLKGSTFVVAGHTDAAGGEDYNQGL 156
           K  +D+ INF  +SA +   +   +    +AL +  L   +FVV GHTDA G + YNQ L
Sbjct: 56  KTGLDMMINFALDSAQLDQTARAELDEFAKALKDNRLSTFSFVVEGHTDATGPDRYNQDL 115

Query: 157 SERRADAIKRYLVDKYGINGTDLVTVGYGKS--KLKDPSHPMAEVNRRVQV 205
           S+RRA ++  +L +  G+    L  +G GKS  ++ +P  P   VNRRV++
Sbjct: 116 SQRRAQSVAAFL-EANGVESVRLEAIGLGKSHPRVANPYDP---VNRRVEM 162


>PA1777 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 350

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 16/114 (14%)

Query: 99  KIDLEINFDYNSADISAKSLPSVQALGRALTNQDLKGSTFVVAGHTDAAGGEDYNQGLSE 158
           ++ L++ FD++ + +   S   ++ L   +  +    ++  V GHTD+ G + YNQ LSE
Sbjct: 237 RVQLDVKFDFDKSKVKENSYADIKNLADFM--KQYPSTSTTVEGHTDSVGTDAYNQKLSE 294

Query: 159 RRADAIKRYLVDKYGINGTDLVTVGYGKSKLKDPSHPMAE--------VNRRVQ 204
           RRA+A++  LV++YG+ G  +  VGYG+S+      P+A+        +NRRV+
Sbjct: 295 RRANAVRDVLVNEYGVEGGRVNAVGYGESR------PVADNATAEGRAINRRVE 342


>AGc3445_2 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 183

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 8/156 (5%)

Query: 59  TSPELNADQAKFVQSVRGRATRSLSSAEREEIATIVQDK-PKIDLE-INFDYNSADI--- 113
           TS + + D  +F++         + S +    +  ++DK  +IDL+ I F   SADI   
Sbjct: 20  TSSDPDRDYYRFLEQPPVEPVERVYSLDEVRYSARIRDKVRRIDLDTITFATGSADIPMA 79

Query: 114 SAKSLPSV-QALGRALTNQDLKGSTFVVAGHTDAAGGEDYNQGLSERRADAIKRYLVDKY 172
            A+SL  V  A+ +AL  Q     TF++ GHTDA G ++ N  LS+ RA ++   L D Y
Sbjct: 80  QARSLRKVADAINKAL--QKNPAETFLIEGHTDAVGSDESNLVLSDERAASVANVLTDVY 137

Query: 173 GINGTDLVTVGYGKSKLKDPSHPMAEVNRRVQVVNV 208
           GI   +L T GYG+  LK  +    + NRRV +  V
Sbjct: 138 GIPPENLATQGYGERYLKVQTLGPEQQNRRVTIRRV 173


>mlr2412_2 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Mlo
           Mesorhizobium loti
          Length = 198

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 3/113 (2%)

Query: 99  KIDLE-INFDYNSADISAKSLPSVQALGRALTNQDLKG--STFVVAGHTDAAGGEDYNQG 155
           ++DL+ +NF++ S+ IS   +  ++ +  A+     K    TF++ GHTDA G  + N  
Sbjct: 75  RVDLDTLNFEFGSSSISDTEVQKLEGVASAMEKLLKKNPAETFLIEGHTDAVGTPEANLA 134

Query: 156 LSERRADAIKRYLVDKYGINGTDLVTVGYGKSKLKDPSHPMAEVNRRVQVVNV 208
           LS+RRA+A+   L + +GI   +L T GYG+  LK  +      NRRV +  +
Sbjct: 135 LSDRRAEAVAEALTNAFGIPPENLTTQGYGEQYLKVNTQAPNRENRRVAIRRI 187


>SMc00141_2 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Sme
           Sinorhizobium meliloti
          Length = 183

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 7/115 (6%)

Query: 99  KIDLE-INFDYNSADIS---AKSLPSV-QALGRALTNQDLKGSTFVVAGHTDAAGGEDYN 153
           +IDL+ I F   SA++S   AK++ +V +A+ + L      G TF + GHTDA G +  N
Sbjct: 61  RIDLDTITFATGSAEVSMSQAKTMRNVAEAMNKVLEKD--PGETFFIEGHTDAVGADQSN 118

Query: 154 QGLSERRADAIKRYLVDKYGINGTDLVTVGYGKSKLKDPSHPMAEVNRRVQVVNV 208
             LS+ RA+++   L + YGI   +LVT GYG+  LK  +    + NRRV +  V
Sbjct: 119 LVLSDERAESVAVLLTEVYGIPAENLVTQGYGERFLKIRTDGPEQENRRVTIRRV 173