BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0002.p (190 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc01828 [M] COG0845 Membrane-fusion protein Sme Sinorhizobium m... 85 1e-16 AGc4337 [M] COG0845 Membrane-fusion protein Atu Agrobacterium tu... 84 2e-16 CC3196 [M] COG0845 Membrane-fusion protein Ccr Caulobacter vibri... 77 2e-14 alr5293 [M] COG0845 Membrane-fusion protein Nos Nostoc sp. PCC 7120 65 1e-10 CC1203 [M] COG0845 Membrane-fusion protein Ccr Caulobacter vibri... 63 5e-10 >SMc01828 [M] COG0845 Membrane-fusion protein Sme Sinorhizobium meliloti Length = 395 Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 7/181 (3%) Query: 2 LRAPAAGLVTEVRTAPGAPASPQAPPMFKISINNEIELDAEVPGFQLLKLNPG--ANVRI 59 ++AP +G+++ GA AS P+F I + EIE+ A+V ++KL G A V++ Sbjct: 205 VKAPVSGVISRKNAKVGAIASGSGEPLFAIIRDGEIEMWADVAESDVIKLAVGQTATVKL 264 Query: 60 SRDDAPDMVGKVRQISPQIDRTTQLGHVRITINNNPTLKVGMFARANIDAKRSCGVAVPR 119 + + GK+R I+P +D T+LG VRI++ + + GM+A A I A++ V +P+ Sbjct: 265 A-GSTTTIEGKIRLIAPTVDPQTRLGTVRISLTDASKARAGMYASAVIVAEQKETVVLPQ 323 Query: 120 TAID----RLTLQVVKGNTVETRRVRVGLTSDTSTEILEGLDVGEIVVADAGTSLHDGDQ 175 TA+ + ++ V+ V V G+ EIL G+ GE VA AG + DGD+ Sbjct: 324 TAVTSEDGKSIVRKVEDGVVRLVPVETGIQDGQFIEILSGIRPGEQAVAKAGAYVRDGDR 383 Query: 176 I 176 I Sbjct: 384 I 384 >AGc4337 [M] COG0845 Membrane-fusion protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 403 Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 5/180 (2%) Query: 2 LRAPAAGLVTEVRTAPGAPASPQAPPMFKISINNEIELDAEVPGFQLLKLNPGANVRIS- 60 ++ P AG+V+ GA AS P+F + + IEL A++ + K+ G ++ Sbjct: 213 VKTPVAGIVSAKNAKVGAIASGAGNPLFTVIKDGAIELVADLSETDIQKVKIGQKAYLTV 272 Query: 61 RDDAPDMVGKVRQISPQIDRTTQLGHVRITINNNPTLKVGMFARANIDAKRSCGVAVPRT 120 A + GKVR +SP +D TT+LG V + + N + GM+A A I + + +A+P + Sbjct: 273 AGGAEKIEGKVRLVSPTVDPTTRLGSVHVVLPENSPARSGMYASAAIIVEETNALALPLS 332 Query: 121 AI----DRLTLQVVKGNTVETRRVRVGLTSDTSTEILEGLDVGEIVVADAGTSLHDGDQI 176 A+ + T + V+G+ V+ ++ G+ EI+ GL G+ VV AG + DGD+I Sbjct: 333 AVTSGREGSTTRKVEGDVVKQVKIETGIEDSGFIEIVSGLAAGDKVVEKAGAFVRDGDRI 392 >CC3196 [M] COG0845 Membrane-fusion protein Ccr Caulobacter vibrioides Length = 369 Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 5/179 (2%) Query: 4 APAAGLVTEVRTAPGAPASPQAPPMFKISINNEIELDAEVPGFQLLKLNPGANVRISRDD 63 AP +G V PG A P F I+ + +ELDAEV L + G +V +S Sbjct: 184 APVSGRVLSRGVQPGQIAGGGTAPWFTIARDGLVELDAEVNEADLGGIRAGQSVAVSLPA 243 Query: 64 APDMVGKVRQISPQIDRTTQLGHVRITINNNPTLKVGMFARANIDAKRSCGVAVPRTAI- 122 + G VR +SP++D T++LG VRI + P L+ G F RA A + AVP +AI Sbjct: 244 GQALSGVVRLVSPRVDSTSRLGKVRIRLPVRPDLRPGGFGRATFGASGAPVTAVPESAIR 303 Query: 123 ---DRLTLQVVKGNT-VETRRVRVGLTSDTSTEILEGLDVGEIVVADAGTSLHDGDQIK 177 D L L V N + V++G ++++G G +V + DGD I+ Sbjct: 304 YEADGLFLMTVDSNNRAKQVPVKIGQKGGGWAQVVQGPSAGTRIVLGGAAFVTDGDVIR 362 >alr5293 [M] COG0845 Membrane-fusion protein Nos Nostoc sp. PCC 7120 Length = 471 Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 27/214 (12%) Query: 2 LRAPAAGLVTEVRTAPGAPASPQAPPMFKISINNEIELDAEVPGFQLLKLNPGANVRISR 61 L +P G++TE T PG + KI+ + I++ +V +L ++ G +V++ Sbjct: 259 LTSPLNGVITERVTEPGNLLQA-GGEILKIADLSRIKVVVQVSELELGEIQVGQSVQVRL 317 Query: 62 DDAPD--MVGKVRQISPQIDRTTQLGHVR-ITINNNPTLKVGMFARANIDAKRSCGVAVP 118 D PD ++G+V +ISP D T +L V +T N+ + G+ AR N ++ V V Sbjct: 318 DAFPDQTIIGRVTRISPTADATARLIPVEVVTPNSQGNIGSGLLARVNFASQTPERVVVS 377 Query: 119 RTAIDRL-------------------TLQVVKGN----TVETRRVRVGLTSDTSTEILEG 155 +TAI R T+ VV + TV R V +G ++D EIL G Sbjct: 378 QTAIQREGKNQQSSPTTPRQSQNQNGTVYVVTDSQGKPTVTARTVTLGKSADGKVEILSG 437 Query: 156 LDVGEIVVADAGTSLHDGDQIKTMFADELDRTRS 189 L GE VA +G L DG+ ++ E + R+ Sbjct: 438 LQPGEQYVARSGRPLKDGENVRLSILSERNPARN 471 >CC1203 [M] COG0845 Membrane-fusion protein Ccr Caulobacter vibrioides Length = 354 Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 83/187 (44%), Gaps = 12/187 (6%) Query: 1 VLRAPAAGLVTEVRTAPGAPASPQAPPMFKISINNEIELDAEVPGFQLLKLNPGANVRIS 60 V+RAP AG V APG SP + + + I +D VP L L G + Sbjct: 148 VIRAPFAGRVGISDVAPGMLISP-GTAIVTLDDTSVIRVDFSVPDRYLETLRIGLPINAQ 206 Query: 61 RDDAPD--MVGKVRQISPQIDRTTQLGHVRITI-NNNPTLKVGMFARANIDAKRSCGVAV 117 D P G++ Q+ +ID TT+ R N N LK GM + ID GVAV Sbjct: 207 PDALPGETFRGRIAQLDTRIDTTTRAIKARAEFPNANGRLKPGMLVKVAIDKGVRTGVAV 266 Query: 118 PRTAI----DRLTLQVV----KGNTVETRRVRVGLTSDTSTEILEGLDVGEIVVADAGTS 169 P A+ ++ ++ V+ KG V G+T D+ EI GL G+ +VAD Sbjct: 267 PEAAVQFEGEQASVYVITKGPKGMIARRTDVTTGITQDSFVEIRSGLKKGDKIVADGLNR 326 Query: 170 LHDGDQI 176 + DG I Sbjct: 327 IQDGAAI 333