BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0004.p (203 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1980 [TK] COG2197 Response regulator containing a CheY-like re... 135 4e-32 VCA0682 [TK] COG2197 Response regulator containing a CheY-like r... 129 4e-30 PA0601 [TK] COG2197 Response regulator containing a CheY-like re... 122 6e-28 RSc0292 [TK] COG2197 Response regulator containing a CheY-like r... 112 8e-25 DR0987 [TK] COG2197 Response regulator containing a CheY-like re... 108 1e-23 >PA1980 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 225 Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 126/206 (61%), Gaps = 12/206 (5%) Query: 1 LIVDDHPVVVSGCRSLFASDKT-VKIEEAADAKAGLRAFTQKRPDVTVIDIKLPDVSGFE 59 L+VDDH VV G +L V++ EA D + L+A ++ P + ++D+ LP +SG E Sbjct: 4 LLVDDHFVVREGLAALLRGLLPDVEVNEAGDGEEALQAVQREIPSLVIVDLGLPGISGLE 63 Query: 60 LLRRIRKDDPVARIIMFSMNDDPAFVVRAVEMGAQGYLSKSDDPRLFVKAVRKVAAGERF 119 L RR+R+ P R++ FS++D+ A V +A++ GA+GY++K P + ++A+R+V AG+ + Sbjct: 64 LTRRLRQRLPQLRVLFFSLHDELALVRQALDAGARGYVTKRAAPTVLLEAIRRVLAGQLY 123 Query: 120 ISPHLAEAIAF------AGAAIKASPASQMSARELEILRLLGRGDKIVEVASALGISYKT 173 + LA +A GAA++ ++ RE EI RLL RG + EVA LG+S KT Sbjct: 124 LEQPLATRLACQSWEEQGGAALRG-----LTRREFEIFRLLARGLALREVAEHLGVSAKT 178 Query: 174 VANATSLLKQKLGAKNHSDLVRIAVE 199 V+N SLLKQKL ++LV A++ Sbjct: 179 VSNHVSLLKQKLQVSTQAELVHRAID 204 >VCA0682 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Vch Vibrio cholerae Length = 208 Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/202 (35%), Positives = 119/202 (58%), Gaps = 4/202 (1%) Query: 2 IVDDHPVVVSGCRSLFASDKTVKIE-EAADAKAGLRAFTQKRPDVTVIDIKLPDVSGFEL 60 +VDDH +V SG L ++ ++++ E AKA A TQ DV +IDI +PD +G L Sbjct: 6 LVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAFYALTQAEVDVAIIDISMPDENGLSL 65 Query: 61 LRRIRKDDPVARIIMFSMNDDPAFVVRAVEMGAQGYLSKSDDPRLFVKAVRKVAAGERFI 120 L R+R+ +P + I+ S+ D +FV +A++ GAQGYLSK P V A+R VA+G R++ Sbjct: 66 LERLRQHNPRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSELVSAIRTVASGRRYL 125 Query: 121 SPHLAEAIAFAGAAIKASPASQMSARELEILRLLGRGDKIVEVASALGISYKTVANATSL 180 A+A+ + + ++ RE+E+ LL +G ++ E+A L +S+KTV + Sbjct: 126 C---ADALVNLSNPDINNVLADLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRAN 182 Query: 181 LKQKLGAKNHSDLVRIAVEMEL 202 + KL N+ D++R A++ +L Sbjct: 183 ILSKLNLTNNVDVIRFALQHQL 204 >PA0601 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 210 Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 113/204 (55%), Gaps = 2/204 (0%) Query: 1 LIVDDHPVVVSGCRSLFASDKTVKI-EEAADAKAGLRAFTQKRPDVTVIDIKLPDVSGFE 59 L+ +DH +V G + L K +++ EA + + L +V ++DI +P V+G E Sbjct: 6 LVAEDHTIVREGIKQLIGMAKDLQVVGEATNGEQLLETLRGTPCEVVLLDISMPGVNGLE 65 Query: 60 LLRRIRKDDPVARIIMFSMNDDPAFVVRAVEMGAQGYLSKSDDPRLFVKAVRKVAAGERF 119 + RIR + I++ SM+D+ RA+++GA GY +K DP L + A+R+VA G R+ Sbjct: 66 AIPRIRALNEPPAILVLSMHDEAQMAARALKIGAAGYATKDSDPALLLTAIRRVAGGGRY 125 Query: 120 ISPHLAEAIAF-AGAAIKASPASQMSARELEILRLLGRGDKIVEVASALGISYKTVANAT 178 I P LA+ + F G P + +S RE + L +G + E+A L +S KT++ Sbjct: 126 IDPDLADRMVFEVGLTDSRPPHALLSEREFSVFERLVQGANVNEIAQQLAVSNKTISTHK 185 Query: 179 SLLKQKLGAKNHSDLVRIAVEMEL 202 + L QKL A + +DLVR A+E L Sbjct: 186 ARLMQKLNAHSVADLVRYAMEHRL 209 >RSc0292 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 210 Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 6/203 (2%) Query: 1 LIVDDHPVVVSGCRSLFASDKTVKIEEAADAKAGLRAFTQKRP---DVTVIDIKLPDVSG 57 LI DDH +V +G R + ++ IE A +A +G Q R DV V+DI +PD +G Sbjct: 5 LIADDHEIVRAGLRQFLSEER--DIEVAGEAASGEEVMEQLRTGTFDVVVLDISMPDRNG 62 Query: 58 FELLRRIRKDDPVARIIMFSMNDDPAFVVRAVEMGAQGYLSKSDDPRLFVKAVRKVAAGE 117 + L+ +R+ P +++ S + + + + GA GYL+K P VKA+R V+ G Sbjct: 63 IDTLKLVRQRHPDLPVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQGR 122 Query: 118 RFISPHLAEAIAFAGAAIKASPASQ-MSARELEILRLLGRGDKIVEVASALGISYKTVAN 176 R++SP +AE + P Q +S RE +I L RG + +A L +S KTV+ Sbjct: 123 RYVSPTVAELLIGGLEKPTDQPLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVST 182 Query: 177 ATSLLKQKLGAKNHSDLVRIAVE 199 + + +K+G K+++DL A++ Sbjct: 183 YRTRILEKMGMKSNADLTYYAIK 205 >DR0987 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Dra Deinococcus radiodurans Length = 239 Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 7/199 (3%) Query: 1 LIVDDHPVVVSGCRSLFASDKTVKIEEAADAKAGLRAFTQKR---PDVTVIDIKLPDVSG 57 L+VDDHPVV G R L + +++ +A +G A Q R PDV ++D+ +P ++G Sbjct: 29 LLVDDHPVVRKGTRELLEGETDLRV--VGEAGSGEEALAQARSLTPDVILMDVSMPGMNG 86 Query: 58 FELLRRIRKDDPVARIIMFSMNDDPAFVVRAVEMGAQGYLSKSDDPRLFVKAVRKVAAGE 117 E + I+ + P +++ + DD A+V +E GA GYL K+ + AVR VAAGE Sbjct: 87 IEATKAIKAEQPSVGVLVLTSYDDDAYVFALLEAGAAGYLLKNASEDDLLGAVRAVAAGE 146 Query: 118 RFISPHLAEAIA--FAGAAIKASPASQMSARELEILRLLGRGDKIVEVASALGISYKTVA 175 + P +A + F+ A+ P +S RELE+LR+ G E+A L IS +TV Sbjct: 147 SALHPSIARKVLERFSVASTPTPPEDDLSPRELEVLRVAASGRTNKEIARDLDISPRTVQ 206 Query: 176 NATSLLKQKLGAKNHSDLV 194 + + KLG + ++ V Sbjct: 207 VHLANIFSKLGVGSRTEAV 225