BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0055.0007.p (228 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all7521 [R] COG0693 Putative intracellular protease/amidase Nos ... 241 6e-64 CC2959 [R] COG0693 Putative intracellular protease/amidase Ccr C... 203 2e-52 CC1780 [R] COG0693 Putative intracellular protease/amidase Ccr C... 169 5e-42 MT0058 [R] COG0693 Putative intracellular protease/amidase MtC M... 142 5e-34 Rv0052 [R] COG0693 Putative intracellular protease/amidase Mtu M... 121 1e-27 >all7521 [R] COG0693 Putative intracellular protease/amidase Nos Nostoc sp. PCC 7120 Length = 226 Score = 241 bits (616), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 113/197 (57%), Positives = 150/197 (76%), Gaps = 1/197 (0%) Query: 7 IGLLVFPKVTQLDLTGPLQVFSSVPGAKVHLIWKRIEPVPTDSVMVLTPTTTFADCPQLD 66 IGL+++P +TQLD+TGP QVF+S+P +V L+WK ++P+ ++ + + PTTTF +CPQLD Sbjct: 9 IGLVIYPDMTQLDITGPHQVFASMPNTQVLLLWKTLQPIVSNGGLTILPTTTFDECPQLD 68 Query: 67 VICVPGG-FGTDDMVGDQDMLAFLRRQAERAKYVTSVCTGSLVLGAAGLLKGYRATTHWS 125 V+CVPGG FG +M+ D MLAFL++QA+ AKYVT+VCTGSL+L AAGLLKGYRA +HW+ Sbjct: 69 VLCVPGGVFGAVEMMQDAQMLAFLQKQAQSAKYVTAVCTGSLILAAAGLLKGYRAASHWA 128 Query: 126 AIDFLSSFGAIPTRTRVCVDRNRFTGGGVTAGIDFALTLVSELVDRKTAEAIQLRLEYNP 185 + L G + RV VD NR TGGGVTAGIDFALT+ + L TA+ I+L LEYNP Sbjct: 129 FREQLRLMGVEVSNERVVVDSNRITGGGVTAGIDFALTIAAMLCGDYTAKFIELMLEYNP 188 Query: 186 APPFNAGSPDTAPAEIL 202 APPF GSP+ AP+ ++ Sbjct: 189 APPFGVGSPEKAPSSLV 205 >CC2959 [R] COG0693 Putative intracellular protease/amidase Ccr Caulobacter vibrioides Length = 258 Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 111/209 (53%), Positives = 136/209 (65%), Gaps = 5/209 (2%) Query: 1 MTEPLQIGLLVFPKVTQLDLTGPLQVFSSVPGAKVHLIWKRIEPVPTDSVMVLTPTTTFA 60 M++ LQI + +FP VT LD TGP QV +PGAKV + + D +V + Sbjct: 33 MSQTLQIVIALFPGVTHLDFTGPHQVLCRLPGAKVTVASLAGGEIEADG-LVFARLPKLS 91 Query: 61 DCPQLDVICVPGGFGTDDMVGDQDMLAFLRRQAERAKYVTSVCTGSLVLGAAGLLKGYRA 120 D DV+ VPGGFGT +GD D +A +RR A+ A+YV SVCTGSLVL AAGLLKG RA Sbjct: 92 DIETCDVLIVPGGFGTTQAMGDPDFIAEIRRLADGARYVCSVCTGSLVLAAAGLLKGKRA 151 Query: 121 TTHWSAIDFLSSFGAIPTRTRVCVDRNRFTGGGVTAGIDFALTLVSELVDRKTAEAIQLR 180 HW+ D L+ FGA+P RV D TGGGVTAGIDFALTL++EL A+ IQL Sbjct: 152 ACHWAWRDQLALFGAVPDAARVARDGRYITGGGVTAGIDFALTLIAELAGDAVAQGIQLA 211 Query: 181 LEYNPAPPFNAGSPDTAPAEILAFMKERI 209 +EY PAPPFN+G P+TAPAE+L ERI Sbjct: 212 VEYAPAPPFNSGRPETAPAEVL----ERI 236 >CC1780 [R] COG0693 Putative intracellular protease/amidase Ccr Caulobacter vibrioides Length = 267 Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 98/199 (49%), Positives = 126/199 (63%), Gaps = 5/199 (2%) Query: 6 QIGLLVFPKVTQLDLTGPLQVFSSVPGAKVHLIWKR--IEPVPTDSVMVLTPTTTFADCP 63 Q+ +L++P T LDL GP F+ + GAKVHL+ + + PV +D + + PTTT ADCP Sbjct: 47 QVAMLLYPGFTALDLVGPHYFFACMMGAKVHLVTNQASLAPVASDLGLAIAPTTTLADCP 106 Query: 64 -QLDVICVPGGF-GTDDMVGDQDMLAFLRRQAERAKYVTSVCTGSLVLGAAGLLKGYRAT 121 L ++ PGG GT D LAFL +A RA+ VTSVCTGS++LGAAGLLKG RAT Sbjct: 107 ADLTLLFCPGGTNGTIAAASDPATLAFLADRAVRAQCVTSVCTGSVILGAAGLLKGRRAT 166 Query: 122 THWSAIDFLSSFGAIPTRTRVCVDRNRFTGGGVTAGIDFALTLVSELVDRKTAEAIQLRL 181 +HW A + LS FGA P RV D TG GV+AG+D L +V L R A A+ L+ Sbjct: 167 SHWVAREQLSRFGATPVDERVVRDGKIITGAGVSAGLDLGLAVVEILRGRPYAAALMLQA 226 Query: 182 EYNPAPPFNAGS-PDTAPA 199 EY+PAPPF G+ +T PA Sbjct: 227 EYSPAPPFPGGTLANTDPA 245 >MT0058 [R] COG0693 Putative intracellular protease/amidase MtC Mycobacterium tuberculosis CDC1551 Length = 212 Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/212 (40%), Positives = 114/212 (53%), Gaps = 7/212 (3%) Query: 5 LQIGLLVFPKVTQLDLTGPLQVFSSVPGAKVHLIWKRIEPVPTDSVMV-LTPTTTFADCP 63 +Q+ + +FP T LD GP +V VP V + R V +D+ M+ L F + Sbjct: 1 MQVAIALFPGNTALDAVGPFEVLQRVPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELT 60 Query: 64 QLDVICVPGGFGTDDMVGDQDMLAFLRRQAERAKYVTSVCTGSLVLGAAGLLKGYRATTH 123 + DV+ PGG GT ++ DQ +L ++R TSVCTG LVL AAGLL G ATTH Sbjct: 61 RPDVVIFPGGIGTRTLIHDQTVLDWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTH 120 Query: 124 WSAIDFLSSFGA--IPTRTRVCVDRNRFTGGGVTAGIDFALTLVSELVDRKTAEAIQLRL 181 W D +S GA +P R + T GV++GID L LV LV R+ AEA QL + Sbjct: 121 WRVQDLFNSLGARYVPQRVVEHLPERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMI 180 Query: 182 EYNPAPPFNAGS-PDTAPAE---ILAFMKERI 209 EY+P PP +AGS +PA L F + R+ Sbjct: 181 EYDPQPPVDAGSLAKASPATHRLALEFYQHRL 212 >Rv0052 [R] COG0693 Putative intracellular protease/amidase Mtu Mycobacterium tuberculosis H37Rv Length = 187 Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/187 (40%), Positives = 100/187 (53%), Gaps = 7/187 (3%) Query: 30 VPGAKVHLIWKRIEPVPTDSVMV-LTPTTTFADCPQLDVICVPGGFGTDDMVGDQDMLAF 88 +P V + R V +D+ M+ L F + + DV+ PGG GT ++ DQ +L + Sbjct: 1 MPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60 Query: 89 LRRQAERAKYVTSVCTGSLVLGAAGLLKGYRATTHWSAIDFLSSFGA--IPTRTRVCVDR 146 +R TSVCTG LVL AAGLL G ATTHW D +S GA +P R + Sbjct: 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120 Query: 147 NRFTGGGVTAGIDFALTLVSELVDRKTAEAIQLRLEYNPAPPFNAGS-PDTAPAE---IL 202 T GV++GID L LV LV R+ AEA QL +EY+P PP +AGS +PA L Sbjct: 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180 Query: 203 AFMKERI 209 F + R+ Sbjct: 181 EFYQHRL 187