BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0054.0023.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc00323 [J] COG0184 Ribosomal protein S15P/S13E Sme Sinorhizobi...   137   7e-33
AGc126 [J] COG0184 Ribosomal protein S15P/S13E Atu Agrobacterium...   136   1e-32
msr5561 [J] COG0184 Ribosomal protein S15P/S13E Mlo Mesorhizobiu...   133   1e-31
BMEI1962 [J] COG0184 Ribosomal protein S15P/S13E Bme Brucella me...   129   2e-30
CC0035 [J] COG0184 Ribosomal protein S15P/S13E Ccr Caulobacter v...   127   9e-30

>SMc00323 [J] COG0184 Ribosomal protein S15P/S13E Sme Sinorhizobium
          meliloti
          Length = 89

 Score =  137 bits (344), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 75/89 (84%)

Query: 1  MSITAERKAEVIKTNANKAGDTGSPEVQVAILSERINNLTEHFKSHVKDNHSRRGLLKLV 60
          MS+TAERKA++IK  A   GDTGSPEVQVAIL+ERINNLTEHFK H KDNHSRRGLL LV
Sbjct: 1  MSVTAERKAQIIKEFATVEGDTGSPEVQVAILTERINNLTEHFKDHKKDNHSRRGLLALV 60

Query: 61 STRRSLLDYIKRKDEARYKALLEKHNIRR 89
          S+RRSLLDY+K+KDEARY  L+    IRR
Sbjct: 61 SSRRSLLDYLKKKDEARYTKLIGALGIRR 89


>AGc126 [J] COG0184 Ribosomal protein S15P/S13E Atu Agrobacterium
          tumefaciens strain C58 (Cereon)
          Length = 89

 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 74/89 (83%)

Query: 1  MSITAERKAEVIKTNANKAGDTGSPEVQVAILSERINNLTEHFKSHVKDNHSRRGLLKLV 60
          MSITAERKA +I   A KAGDTGSPEVQVAIL+ERINNLT HFK H KDNHSRRGLL LV
Sbjct: 1  MSITAERKAALITEYATKAGDTGSPEVQVAILTERINNLTGHFKDHKKDNHSRRGLLTLV 60

Query: 61 STRRSLLDYIKRKDEARYKALLEKHNIRR 89
          S+RRSLLDY+K+KDEARY  L+    IRR
Sbjct: 61 SSRRSLLDYLKKKDEARYTKLIGALGIRR 89


>msr5561 [J] COG0184 Ribosomal protein S15P/S13E Mlo Mesorhizobium loti
          Length = 89

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 73/89 (82%)

Query: 1  MSITAERKAEVIKTNANKAGDTGSPEVQVAILSERINNLTEHFKSHVKDNHSRRGLLKLV 60
          MSITAERK E++   A   GDTGSPEVQVAILSERI NLT+HFK H KDNHSRRGLL LV
Sbjct: 1  MSITAERKKELMGEFATAKGDTGSPEVQVAILSERIKNLTDHFKDHKKDNHSRRGLLALV 60

Query: 61 STRRSLLDYIKRKDEARYKALLEKHNIRR 89
          S RRSLLDY+KRKD+ RY+ L+EK  +RR
Sbjct: 61 SQRRSLLDYLKRKDDVRYQTLIEKLGLRR 89


>BMEI1962 [J] COG0184 Ribosomal protein S15P/S13E Bme Brucella melitensis
          Length = 120

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 71/89 (79%)

Query: 1   MSITAERKAEVIKTNANKAGDTGSPEVQVAILSERINNLTEHFKSHVKDNHSRRGLLKLV 60
           MSITAERK  +IK  A K GDTGSPEVQVA+LSERI NLTEHFK H  DNHSRRGLLKLV
Sbjct: 32  MSITAERKQALIKEYATKEGDTGSPEVQVAVLSERIANLTEHFKGHKNDNHSRRGLLKLV 91

Query: 61  STRRSLLDYIKRKDEARYKALLEKHNIRR 89
           S RR LLDY+K  D ARY+AL+ +  +RR
Sbjct: 92  SQRRRLLDYVKGVDHARYQALITRLGLRR 120


>CC0035 [J] COG0184 Ribosomal protein S15P/S13E Ccr Caulobacter
          vibrioides
          Length = 89

 Score =  127 bits (318), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 73/89 (82%)

Query: 1  MSITAERKAEVIKTNANKAGDTGSPEVQVAILSERINNLTEHFKSHVKDNHSRRGLLKLV 60
          MSIT ERKA +I  +A   GDTGS EVQVAILSERI NLTEHFK+H KDNHSRRGLLKLV
Sbjct: 1  MSITLERKAALIAEHARSTGDTGSAEVQVAILSERIANLTEHFKTHKKDNHSRRGLLKLV 60

Query: 61 STRRSLLDYIKRKDEARYKALLEKHNIRR 89
          S RR LLD++K+ D ARY++L+EK  +RR
Sbjct: 61 SQRRRLLDHLKKSDAARYQSLIEKLGLRR 89