BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0053.0022.p         (99 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1309 [L] COG0776 Bacterial nucleoid DNA-binding protein Bha Ba...    84   9e-17
BS_hbs [L] COG0776 Bacterial nucleoid DNA-binding protein Bsu Ba...    82   3e-16
BS_yonN [L] COG0776 Bacterial nucleoid DNA-binding protein Bsu B...    82   4e-16
SA1305 [L] COG0776 Bacterial nucleoid DNA-binding protein Sau St...    81   5e-16
HI0430 [L] COG0776 Bacterial nucleoid DNA-binding protein Hin Ha...    79   2e-15

>BH1309 [L] COG0776 Bacterial nucleoid DNA-binding protein Bha Bacillus
          halodurans
          Length = 90

 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 58/85 (68%)

Query: 15 HLAAAIAEEQELSKKQAEAILTDMVTRITKHLKKGERIRIVGLGILQVRKRAARMGRNPA 74
           L  A+AE+ ELSKK A   +  +   IT  LK+G ++++VG G  +VR+R+AR GRNP 
Sbjct: 5  DLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKGRNPQ 64

Query: 75 TGEQIHIKASKKVAFRAAKELKEAV 99
          TGE+I I A+K  AF+  K+LK+AV
Sbjct: 65 TGEEIEIPATKNPAFKPGKQLKDAV 89


>BS_hbs [L] COG0776 Bacterial nucleoid DNA-binding protein Bsu Bacillus
          subtilis
          Length = 92

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 55/85 (64%)

Query: 15 HLAAAIAEEQELSKKQAEAILTDMVTRITKHLKKGERIRIVGLGILQVRKRAARMGRNPA 74
           L  A+AE  ELSKK A   +  +   I   LK G++I+++G G  +VR+R+AR GRNP 
Sbjct: 5  ELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKGRNPQ 64

Query: 75 TGEQIHIKASKKVAFRAAKELKEAV 99
          TGE+I I ASK  AF+  K LK+AV
Sbjct: 65 TGEEIEIPASKVPAFKPGKALKDAV 89


>BS_yonN [L] COG0776 Bacterial nucleoid DNA-binding protein Bsu Bacillus
          subtilis
          Length = 92

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 57/85 (67%)

Query: 15 HLAAAIAEEQELSKKQAEAILTDMVTRITKHLKKGERIRIVGLGILQVRKRAARMGRNPA 74
           L A +AE+Q +SKK+    +  +   I++ LK GE++ I G G  +VR+RAAR GRNP 
Sbjct: 5  ELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKGRNPQ 64

Query: 75 TGEQIHIKASKKVAFRAAKELKEAV 99
          TGE+I I A+K  AF+ AK LK+AV
Sbjct: 65 TGEEIDIPATKAPAFKPAKALKDAV 89


>SA1305 [L] COG0776 Bacterial nucleoid DNA-binding protein Sau
          Staphylococcus aureus N315
          Length = 90

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 59/85 (69%)

Query: 15 HLAAAIAEEQELSKKQAEAILTDMVTRITKHLKKGERIRIVGLGILQVRKRAARMGRNPA 74
           L  A+AE+ +L+KK+A + +  +   I   L KGE+++++G G  +VR+RAAR GRNP 
Sbjct: 5  DLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKGRNPQ 64

Query: 75 TGEQIHIKASKKVAFRAAKELKEAV 99
          TG++I I ASK  AF+A K LK+AV
Sbjct: 65 TGKEIDIPASKVPAFKAGKALKDAV 89


>HI0430 [L] COG0776 Bacterial nucleoid DNA-binding protein Hin Haemophilus
           influenzae
          Length = 136

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 56/85 (65%)

Query: 15  HLAAAIAEEQELSKKQAEAILTDMVTRITKHLKKGERIRIVGLGILQVRKRAARMGRNPA 74
            L  AIA   EL+KKQA+A L   +  IT  LK+GE ++++G G  +V +RAAR GRNP 
Sbjct: 51  DLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTGRNPQ 110

Query: 75  TGEQIHIKASKKVAFRAAKELKEAV 99
           TG +I I ASK  AF + K LK+A+
Sbjct: 111 TGAEIQIAASKVPAFVSGKALKDAI 135