BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0010.p (424 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr8474 [O] COG1219 ATP-dependent protease Clp, ATPase subunit M... 739 0.0 SMc01904 [O] COG1219 ATP-dependent protease Clp, ATPase subunit ... 724 0.0 BMEI0875 [O] COG1219 ATP-dependent protease Clp, ATPase subunit ... 720 0.0 AGc2327 [O] COG1219 ATP-dependent protease Clp, ATPase subunit A... 717 0.0 CC1961 [O] COG1219 ATP-dependent protease Clp, ATPase subunit Cc... 702 0.0 >mlr8474 [O] COG1219 ATP-dependent protease Clp, ATPase subunit Mlo Mesorhizobium loti Length = 424 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/424 (83%), Positives = 393/424 (92%), Gaps = 2/424 (0%) Query: 1 MSKVG--TSDAKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVK 58 MSKVG + D+KNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENK+S+VK Sbjct: 1 MSKVGNNSGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVK 60 Query: 59 SRDGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIG 118 SR+G+PTP+EI KVLDDYVIGQ +AK+VLSVAVHNHYKRL H K+NDVELAKSNILLIG Sbjct: 61 SREGVPTPQEILKVLDDYVIGQPYAKRVLSVAVHNHYKRLAHAGKNNDVELAKSNILLIG 120 Query: 119 PTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRG 178 PTG GKTLLAQTLARI+DVPFTMADATTLTEAGYVGEDVENIILKLLQ+ADYNVERAQRG Sbjct: 121 PTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRG 180 Query: 179 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPHGGRKHPQQEFLQVD 238 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPP GGRKHPQQEFLQVD Sbjct: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVD 240 Query: 239 TTNILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLI 298 T NILFICGGAF+GL+KIIS RGR TSIGF A V +PEDRRTG+IFR VEPEDLLK+GLI Sbjct: 241 TANILFICGGAFAGLDKIISDRGRKTSIGFGATVASPEDRRTGDIFRQVEPEDLLKFGLI 300 Query: 299 PEFVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARK 358 PEFVGRLPV+ATLEDLDE +L +ILT+PKNALVKQYQRLFEMEN++LTF + AL A+A++ Sbjct: 301 PEFVGRLPVLATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENALSAIAKR 360 Query: 359 AIERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRAV 418 AIERKTGARGLRSI+E+ILL+TMF+LP LEGV EVVIS EVV G+ARPLYIY+++ ++ Sbjct: 361 AIERKTGARGLRSIMEAILLDTMFELPALEGVREVVISEEVVTGSARPLYIYSEQKEKKG 420 Query: 419 ESSA 422 SA Sbjct: 421 NVSA 424 >SMc01904 [O] COG1219 ATP-dependent protease Clp, ATPase subunit Sme Sinorhizobium meliloti Length = 425 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/425 (81%), Positives = 386/425 (90%), Gaps = 3/425 (0%) Query: 1 MSKVGTS---DAKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLV 57 MSKV S D+KNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENK+S+V Sbjct: 1 MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMV 60 Query: 58 KSRDGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLI 117 KSRDG+PTP+EI KVLD+YVIGQ AK++LSVAVHNHYKRL H K +DVELAKSNI+L+ Sbjct: 61 KSRDGVPTPQEIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLV 120 Query: 118 GPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 GPTG GKT LAQTLARI+DVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR Sbjct: 121 GPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180 Query: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPHGGRKHPQQEFLQV 237 GIVYIDE+DKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPP GGRKHPQQEFLQV Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 238 DTTNILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGL 297 DTTNILFICGGAF+GL+KIISARG TSIGF A V APEDRR GE+ R +EPEDL+K+GL Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRAPEDRRVGEVLRELEPEDLVKFGL 300 Query: 298 IPEFVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVAR 357 IPEF+GRLPV+ATLEDLDE +L +IL++PKNALVKQYQRLFEME++EL F ++AL +AR Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIAR 360 Query: 358 KAIERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRA 417 +AI RKTGARGLRSI+E ILL+TMF+LP LEGV EVVIS EVV+GTARPLYIY++RS+ Sbjct: 361 RAIVRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISDEVVKGTARPLYIYSERSEEK 420 Query: 418 VESSA 422 SA Sbjct: 421 TNVSA 425 >BMEI0875 [O] COG1219 ATP-dependent protease Clp, ATPase subunit Bme Brucella melitensis Length = 424 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/424 (81%), Positives = 386/424 (91%), Gaps = 2/424 (0%) Query: 1 MSKV--GTSDAKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVK 58 MSKV G D+KNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSS+VK Sbjct: 1 MSKVSNGGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSMVK 60 Query: 59 SRDGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIG 118 SR+G+PTP+EI VLDDYVIGQ AK+VLSVAVHNHYKRL HQ+K++D+ELAKSNILL+G Sbjct: 61 SREGVPTPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVG 120 Query: 119 PTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRG 178 PTG GKT LAQTLARI+DVPF MADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRG Sbjct: 121 PTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRG 180 Query: 179 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPHGGRKHPQQEFLQVD 238 IVYIDE+DKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPP GGRKHPQQEFLQVD Sbjct: 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVD 240 Query: 239 TTNILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLI 298 TTNILFICGGAF+GL++IISARG TSIGF A V + ++RR GE+F+ +EPEDLLK+GLI Sbjct: 241 TTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGLI 300 Query: 299 PEFVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARK 358 PEFVGRLPV+ATLEDLD +L +ILT+PKNALVKQYQRLF+MEN+EL F D+AL A+A K Sbjct: 301 PEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANK 360 Query: 359 AIERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRAV 418 A+ERKTGARGLRSI+E ILL+TMF+LP LEGV EVVIS +VV+G+ARPLYIYA+R D Sbjct: 361 AVERKTGARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYIYAERQDEKG 420 Query: 419 ESSA 422 SA Sbjct: 421 NVSA 424 >AGc2327 [O] COG1219 ATP-dependent protease Clp, ATPase subunit Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 425 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/425 (80%), Positives = 384/425 (90%), Gaps = 3/425 (0%) Query: 1 MSKVGTS---DAKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLV 57 MSKV S D+KNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENK+S+V Sbjct: 1 MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMV 60 Query: 58 KSRDGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLI 117 KSR+G+PTP++I K+LD+YVIGQ AKK+LSVAVHNHYKRL H +K+ DVELAKSNI+L+ Sbjct: 61 KSREGVPTPQDIIKILDEYVIGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLV 120 Query: 118 GPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 GPTG GKT LAQTLARI+DVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR Sbjct: 121 GPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180 Query: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPHGGRKHPQQEFLQV 237 GIVYIDE+DKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPP GGRKHPQQEFLQV Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 238 DTTNILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGL 297 DTTNILFICGGAF+GL+KIISARG TSIGF A V A +DRR GE+ R +EPEDL+K+GL Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGL 300 Query: 298 IPEFVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVAR 357 IPEF+GRLPV+ATLEDLDE +L +IL++PKNALVKQYQRLFEME++ELTF ++AL +AR Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIAR 360 Query: 358 KAIERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRA 417 +AI RKTGARGLRSI+E ILL+TMF+LP LEGV EVVIS +VV G ARPLYIYADR + Sbjct: 361 RAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISNDVVSGVARPLYIYADRQEEK 420 Query: 418 VESSA 422 SA Sbjct: 421 ANVSA 425 >CC1961 [O] COG1219 ATP-dependent protease Clp, ATPase subunit Ccr Caulobacter vibrioides Length = 420 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/420 (82%), Positives = 385/420 (91%) Query: 1 MSKVGTSDAKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR 60 M+K + D K+TLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREE+K + VKS+ Sbjct: 1 MTKAASGDTKSTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREEHKIAFVKSK 60 Query: 61 DGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT 120 DG+PTP+EIC+VLDDYVIGQ HAKKVL+VAVHNHYKRLNH +K+NDVELAKSNILL+GPT Sbjct: 61 DGVPTPREICEVLDDYVIGQGHAKKVLAVAVHNHYKRLNHASKNNDVELAKSNILLVGPT 120 Query: 121 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV 180 G+GKTLLAQTLARI+DVPFTMADATTLTEAGYVGEDVENI+LKLLQAADYNVERAQRGIV Sbjct: 121 GTGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQRGIV 180 Query: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPHGGRKHPQQEFLQVDTT 240 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPP GGRKHPQQEFLQVDTT Sbjct: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT 240 Query: 241 NILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE 300 NILFICGGAF+GLEKIISARG + SIGF A+V PE+RRTGEI R+VEP+DL ++GLIPE Sbjct: 241 NILFICGGAFAGLEKIISARGAAKSIGFGAKVTDPEERRTGEILRNVEPDDLQRFGLIPE 300 Query: 301 FVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI 360 F+GRLPVVATLEDLDE +L KILT+PKNA VKQYQRLFEMENI LTF ++AL VA+KAI Sbjct: 301 FIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHQVAKKAI 360 Query: 361 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRAVES 420 RKTGARGLRSI+E ILLETMF+LP EGVEEVV++ EVVEG A+PL IYA++ A + Sbjct: 361 ARKTGARGLRSIMEGILLETMFELPTYEGVEEVVVNAEVVEGRAQPLLIYAEKKGGAASA 420