BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0008.p (342 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02050 [O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomera... 337 2e-92 BMEI1069 [O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomera... 307 2e-83 AGc3060 [O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomeras... 305 9e-83 mll1054 [O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomeras... 305 1e-82 CC1964 [O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase... 281 2e-75 >SMc02050 [O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Sme Sinorhizobium meliloti Length = 491 Score = 337 bits (865), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 167/336 (49%), Positives = 240/336 (71%), Gaps = 1/336 (0%) Query: 3 YTVAIEVVPPIQLADFKSFSVEKPVVDVSDADVDDAIKRIAEGSRPYNAKTEGAAEKGDR 62 +TVA E++PPI+L D V + VVDVS+ +V++ I+RIAE +R Y +K +G A GDR Sbjct: 113 FTVAYEIIPPIELKDASGIKVTREVVDVSEDEVNEQIQRIAESARTYESK-KGKAANGDR 171 Query: 63 VTISFKGTINGEAFEGGTGEGIQVVIGAGQFIPGFEEQLIGIGTNETRTLKVSFPKNYLN 122 VT+ + G ++GEAF+GG E ++V+G+ +FIPGFEEQL+G+ + +T+ V+FP +Y Sbjct: 172 VTVDYLGKVDGEAFDGGKDEDAELVLGSNRFIPGFEEQLVGVKAGDEKTITVTFPADYPA 231 Query: 123 EKLAGQPAEFETTATLIEAPGETTIDDEFARTLGLESLDKLKEAARERLTAEFAGATRQK 182 LAG+ A F+ T + A I+DE A LGLES+DKLKE R ++ ++F TRQK Sbjct: 232 ANLAGKEATFDITVKDVAAAAPIEINDELATKLGLESVDKLKEIVRGQIESQFGSITRQK 291 Query: 183 VKRALLDRLDESHKFEAPPSLVAEEFNLMWNSIKAEMDSSGKTFADENTTEEAAKEEYHK 242 VKR LLD+LDE ++F+ P LV EF +W I ++ +GKTFADE+TTEE A+ EY K Sbjct: 292 VKRQLLDQLDELYQFDTPERLVDAEFENIWRQINTDLQQAGKTFADEDTTEEEARAEYRK 351 Query: 243 IADRRVRLGLVLSEIGEKNKITVTDDEVSRAVIERARQVPGREKEVWDYYRSNAQALAQL 302 +A+RRVRLGLVLSEIGEK + V+DDE+ R++ E+ RQ PG+EKE+ +Y+R+ A A L Sbjct: 352 LAERRVRLGLVLSEIGEKAGVQVSDDEMQRSLFEQLRQFPGQEKEILEYFRNTPGAAASL 411 Query: 303 RAPIYEDKVVDFVLELANVTEKKVTKDELFKDEDAE 338 RAP++E+KVVD +L +VT+KKV+K+EL D++ + Sbjct: 412 RAPLFEEKVVDHLLTEVSVTDKKVSKEELTADDEGD 447 >BMEI1069 [O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Bme Brucella melitensis Length = 485 Score = 307 bits (787), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 166/338 (49%), Positives = 237/338 (70%), Gaps = 2/338 (0%) Query: 1 LTYTVAIEVVPPIQLADFKSFSVEKPVVDVSDADVDDAIKRIAEGSRPYNAKTEGAAEKG 60 +++ EV+P I++ DF +V + VVD+SD +VD+ +KRIA +R + K +G AE Sbjct: 119 FVFSLNYEVLPAIEVKDFSKIAVTREVVDISDEEVDEQVKRIASSTRTFETK-KGKAENE 177 Query: 61 DRVTISFKGTINGEAFEGGTGEGIQVVIGAGQFIPGFEEQLIGIGTNETRTLKVSFPKNY 120 DRVTI + G ++GE FEGG Q+V+G+GQFIPGFEEQLIG+ + + + V+FP Y Sbjct: 178 DRVTIDYLGKLDGEPFEGGADNDAQLVLGSGQFIPGFEEQLIGLKAGDEKVITVTFPAEY 237 Query: 121 LNEKLAGQPAEFETTATLIEAPGETTIDDEFARTLGLESLDKLKEAARERLTAEFAGATR 180 LAG+ A F+ + P E +DDE A+ LG+ESL++L++ RE++ +++ TR Sbjct: 238 GAAHLAGKEATFDIKVKEVAKPNELVLDDETAKKLGIESLERLRQVVREQIESQYGQITR 297 Query: 181 QKVKRALLDRLDESHKFEAPPSLVAEEFNLMWNSIKAEMDSSGKTFADENTTEEAAKEEY 240 QKVKR +LD LD ++FE P LV EFN +W I ++ +G+TF DE TTEEAA+EEY Sbjct: 298 QKVKRQILDALDGDYQFETPQKLVDAEFNNIWQQINFDLQQAGRTFEDEETTEEAAREEY 357 Query: 241 HKIADRRVRLGLVLSEIGEKNKITVTDDEVSRAVIERARQVPGREKEVWDYYRSNAQALA 300 K+A+RRVRLGLVLSEIGEK + VT++E+ RAV ++ R+ PG+EKE++D+ R A+A Sbjct: 358 RKLAERRVRLGLVLSEIGEKAGVEVTEEELQRAVYDQVRRYPGQEKEIYDFLRRTPDAVA 417 Query: 301 QLRAPIYEDKVVDFVLELANVTEKKVTKDELF-KDEDA 337 LRAPI+E+KVVD +L NVT+KKV+K+EL +DEDA Sbjct: 418 NLRAPIFEEKVVDHLLANINVTDKKVSKEELTAEDEDA 455 >AGc3060 [O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 497 Score = 305 bits (781), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 160/338 (47%), Positives = 239/338 (70%), Gaps = 1/338 (0%) Query: 3 YTVAIEVVPPIQLADFKSFSVEKPVVDVSDADVDDAIKRIAEGSRPYNAKTEGAAEKGDR 62 +TVA E++P I+L V + VV+VS+ ++++ I +IAE +R Y K +G A GDR Sbjct: 118 FTVAYEIIPAIELKANDGIKVTREVVEVSEDEINEQILKIAESARTYETK-KGKAADGDR 176 Query: 63 VTISFKGTINGEAFEGGTGEGIQVVIGAGQFIPGFEEQLIGIGTNETRTLKVSFPKNYLN 122 VT+++ G ++G AF+GGT E ++V+G+G+FIPGFE+QL+G+ + +T+ V+FP +Y Sbjct: 177 VTMNYLGKVDGVAFDGGTAEDAELVLGSGRFIPGFEDQLVGVKAGDEKTITVTFPADYPA 236 Query: 123 EKLAGQPAEFETTATLIEAPGETTIDDEFARTLGLESLDKLKEAARERLTAEFAGATRQK 182 LAG+ A F+ T + A I+DE A LGLES +KLKE + ++ ++F TRQK Sbjct: 237 ANLAGKDATFDVTVKEVAAAAAVEINDELAEKLGLESAEKLKEIVKGQIESQFGNVTRQK 296 Query: 183 VKRALLDRLDESHKFEAPPSLVAEEFNLMWNSIKAEMDSSGKTFADENTTEEAAKEEYHK 242 VKR +LD+LDE +KF+ P LV EF+ +W I ++ SGKTFADE+TTEE A+EEY K Sbjct: 297 VKRQILDQLDEMYKFDTPAGLVDAEFDNIWRQINTDLAQSGKTFADEDTTEEEAREEYRK 356 Query: 243 IADRRVRLGLVLSEIGEKNKITVTDDEVSRAVIERARQVPGREKEVWDYYRSNAQALAQL 302 +A+RRVRLGLVLSEIGEK + VT++E+ RA+ ++ +Q PG++KE+ D++R+ A A L Sbjct: 357 LAERRVRLGLVLSEIGEKAGVEVTEEEMQRALFQQLQQFPGQQKEILDFFRNTPGASASL 416 Query: 303 RAPIYEDKVVDFVLELANVTEKKVTKDELFKDEDAEKT 340 RAPI+E+KV+D +L +VT+K V+K+EL D+ E+T Sbjct: 417 RAPIFEEKVIDKLLTEISVTDKTVSKEELLADDGEEET 454 >mll1054 [O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Mlo Mesorhizobium loti Length = 492 Score = 305 bits (780), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 166/340 (48%), Positives = 240/340 (70%), Gaps = 3/340 (0%) Query: 3 YTVAIEVVPPIQLADFKSFSVEKPVVDVSDADVDDAIKRIAEGSRPYNAKTEGAAEKGDR 62 + + EV+P I++ DF V + V DV DA++DD +KR+AE +R Y KT AAE GDR Sbjct: 113 FRLNYEVIPAIEIKDFSDIKVTRQVFDVPDAEIDDQVKRVAESARSYEPKTGKAAE-GDR 171 Query: 63 VTISFKGTINGEAFEGGTGEGIQVVIGAGQFIPGFEEQLIGIGTNETRTLKVSFPKNYLN 122 V+I + G I+GEAF GG G +V+G+ +FIPGFE+QLIG + + + V+FP+NY Sbjct: 172 VSIDYVGKIDGEAFAGGAGTDQLLVLGSKEFIPGFEDQLIGTKAGDEKQVTVTFPENYQA 231 Query: 123 EKLAGQPAEFETTATLIEAPGETTIDDEFARTLGLESLDKLKEAARERLTAEFAGATRQK 182 LAG+ A F+ T + PGE I+DE A+ LGLESL++L+E R ++ +F TRQK Sbjct: 232 AHLAGKEATFDVTVKEVSKPGELEINDETAKNLGLESLERLREIVRGQIENQFGSMTRQK 291 Query: 183 VKRALLDRLDESHKFEAPPSLVAEEFNLMWNSIKAEMDSSGKTFADENTTEEAAKEEYHK 242 VKR LLD+LD ++ FEAP L+ EFN +W + +++++G+TFADE TTEE A+ EY + Sbjct: 292 VKRQLLDQLDAAYSFEAPSKLIDAEFNNIWAQVTRDLEAAGRTFADEETTEEEARAEYLR 351 Query: 243 IADRRVRLGLVLSEIGEKNKITVTDDEVSRAVIERARQVPG-REKEVWDYYRSNAQALAQ 301 +A+RRVRLGLVL+EIGEK +TV+D+E+ R + E+ R+ P +++E +++YRSN +AL Sbjct: 352 LAERRVRLGLVLAEIGEKAGVTVSDEELQRGLFEQVRRFPANQQQEAFEFYRSNPEALNA 411 Query: 302 LRAPIYEDKVVDFVLELANVTEKKVTKDELF-KDEDAEKT 340 LRAP++E+KVVD +L +VT+ KV+K+EL DEDAE T Sbjct: 412 LRAPMFEEKVVDHLLGQISVTDVKVSKEELMADDEDAETT 451 >CC1964 [O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Ccr Caulobacter vibrioides Length = 452 Score = 281 bits (718), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/338 (44%), Positives = 212/338 (62%), Gaps = 2/338 (0%) Query: 1 LTYTVAIEVVPPIQLADFKSFSVEKPVVDVSDADVDDAIKRIAEGSRPYNAKTEGA--AE 58 L++ +A+EV+P + D S + KPV VSD +V +A+ +A+ +R Y +T + A+ Sbjct: 108 LSFDLAVEVMPEFEPIDPTSIELVKPVYKVSDEEVQEALDELAKQARTYEPRTGKSLKAK 167 Query: 59 KGDRVTISFKGTINGEAFEGGTGEGIQVVIGAGQFIPGFEEQLIGIGTNETRTLKVSFPK 118 GD++ I F GTI+G F GG EG ++V+G+GQFIPGFE+QL+G + +KV FP+ Sbjct: 168 DGDQLLIDFVGTIDGVEFAGGKAEGAELVLGSGQFIPGFEDQLVGAKPGDDVVVKVKFPE 227 Query: 119 NYLNEKLAGQPAEFETTATLIEAPGETTIDDEFARTLGLESLDKLKEAARERLTAEFAGA 178 Y + LAG+ AEF T + AP + DDE A+ LGL L L E + L + + Sbjct: 228 EYQAKDLAGKDAEFATKVQEVRAPVDGKADDELAKRLGLSDLAALTELLKSNLAGRYDNS 287 Query: 179 TRQKVKRALLDRLDESHKFEAPPSLVAEEFNLMWNSIKAEMDSSGKTFADENTTEEAAKE 238 +R K+KRALLD LD H F PP +V EF +W ++A+ G D TE+ K+ Sbjct: 288 SRFKLKRALLDVLDTKHDFPLPPRMVDAEFAGIWQQVEADKARGGLPPEDAEKTEDQLKD 347 Query: 239 EYHKIADRRVRLGLVLSEIGEKNKITVTDDEVSRAVIERARQVPGREKEVWDYYRSNAQA 298 EY KIA+RRVRLGLVL+EIG KN + VTD E++ A++ ARQ + ++V+D YR A Sbjct: 348 EYKKIAERRVRLGLVLAEIGRKNDVVVTDQELTDAIMREARQYGAQAQQVFDMYRQRADL 407 Query: 299 LAQLRAPIYEDKVVDFVLELANVTEKKVTKDELFKDED 336 A LRAPIYEDKVVD + A + EK+V+KDEL +++D Sbjct: 408 QAALRAPIYEDKVVDLIFGKAKIEEKEVSKDELLEEDD 445