BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0052.0005.p (241 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0953 Non COG 287 2e-77 STM1761 [C] COG2181 Nitrate reductase gamma subunit Sty Salmonel... 224 1e-58 ZnarI [C] COG2181 Nitrate reductase gamma subunit EcZ Escherichi... 224 1e-58 ECs1732 [C] COG2181 Nitrate reductase gamma subunit Ecs Escheric... 224 1e-58 PA3872 [C] COG2181 Nitrate reductase gamma subunit Pae Pseudomon... 224 2e-58 >BMEII0953 Non COG Length = 241 Score = 287 bits (734), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 149/237 (62%), Positives = 183/237 (77%), Gaps = 1/237 (0%) Query: 5 NAIVFGWYPYLCLTVFLFGSLVRFDREQYSWRSGSSQLLRRRQLVWGSNLFHVGILFIFL 64 N +FG YPY+ L+V GS+VR+DRE Y+WRSGSSQLLRRRQL+WGS LFH+G+L IF Sbjct: 6 NTFLFGIYPYIALSVLALGSIVRYDREPYTWRSGSSQLLRRRQLMWGSVLFHLGVLVIFA 65 Query: 65 GHFVGLLTPIWIFDMLGVSHGFKQMLAIVAGGAAGLMCLAGISLLTHRRLFDPRIRANSS 124 GHFVGLLTPIWIFD LG+SH KQ+LAIVAGG AGLM + G S+L HRRLFDPR+RA+S Sbjct: 66 GHFVGLLTPIWIFDTLGISHEAKQILAIVAGGIAGLMAIIGASMLVHRRLFDPRVRASSR 125 Query: 125 FGDTAILLILFAQLLLGLATIPVSLGHLDGHEMVKFMGWAQGILTLQPGIAANILDVHPI 184 DT I+++L+ QLLLGL++IPVSL H+DG EMVKFM WAQGI T P ++ + D + Sbjct: 126 PSDTLIIILLWVQLLLGLSSIPVSLQHIDGGEMVKFMNWAQGIFTFNPAASSYVADASIV 185 Query: 185 FKAHLVLGMTIFLVFPFTRLVHIWSAPVWYLGRRGYQVVRRSDGASRAADRPLQPAE 241 FK H+ LG+TIF++FPFTRLVH+ SAPV Y+ R GYQVVR + + A PAE Sbjct: 186 FKMHIFLGLTIFILFPFTRLVHMLSAPVRYIWRPGYQVVRERNHTA-APSHLRAPAE 241 >STM1761 [C] COG2181 Nitrate reductase gamma subunit Sty Salmonella typhimurium LT2 Length = 225 Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 117/224 (52%), Positives = 156/224 (69%), Gaps = 2/224 (0%) Query: 1 MQTLNAIVFGWYPYLCLTVFLFGSLVRFDREQYSWRSGSSQLLRRRQLVWGSNLFHVGIL 60 M LN F YPY+ +VFL GS +R+D QY+WR+ SSQ+L R+ + SNLFH+GIL Sbjct: 1 MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGIL 60 Query: 61 FIFLGHFVGLLTPIWIFDMLGVSHGFKQMLAIVAGGAAGLMCLAGISLLTHRRLFDPRIR 120 IF GHF+G+LTP W+++ + KQ +A++AGGA G++ L G LL RRLF PR+R Sbjct: 61 GIFAGHFLGMLTPHWMYEAF-LPVDVKQKMAMIAGGACGVLTLVGGILLLKRRLFSPRVR 119 Query: 121 ANSSFGDTAILLILFAQLLLGLATIPVSLGHLDGHEMVKFMGWAQGILTLQPGIAANILD 180 A ++ D IL +L Q LGL TIP S H+DG EM+K +GWAQ ++T G +A++ Sbjct: 120 ATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASAHLDG 179 Query: 181 VHPIFKAHLVLGMTIFLVFPFTRLVHIWSAPVWYLGRRGYQVVR 224 V IF+ HLVLGMT+FL+FPF+RLVHIWS PV YL R+ YQ+VR Sbjct: 180 VAFIFRMHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRK-YQIVR 222 >ZnarI [C] COG2181 Nitrate reductase gamma subunit EcZ Escherichia coli O157:H7 EDL933 Length = 225 Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 118/224 (52%), Positives = 156/224 (69%), Gaps = 2/224 (0%) Query: 1 MQTLNAIVFGWYPYLCLTVFLFGSLVRFDREQYSWRSGSSQLLRRRQLVWGSNLFHVGIL 60 MQ LN F YPY+ VFL GS +R+D QY+WR+ SSQ+L R+ + SNLFH+GIL Sbjct: 1 MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGIL 60 Query: 61 FIFLGHFVGLLTPIWIFDMLGVSHGFKQMLAIVAGGAAGLMCLAGISLLTHRRLFDPRIR 120 IF+GHF G+LTP W+++ + KQ +A+ AGGA+G++CL G LL RRLF PR+R Sbjct: 61 GIFVGHFFGMLTPHWMYEAW-LPIEVKQKMAMFAGGASGVLCLIGGVLLLKRRLFSPRVR 119 Query: 121 ANSSFGDTAILLILFAQLLLGLATIPVSLGHLDGHEMVKFMGWAQGILTLQPGIAANILD 180 A ++ D IL +L Q LGL TIP S H+DG EM+K +GWAQ ++T G + ++ Sbjct: 120 ATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDG 179 Query: 181 VHPIFKAHLVLGMTIFLVFPFTRLVHIWSAPVWYLGRRGYQVVR 224 V IF+ HLVLGMT+FL+FPF+RLVHIWS PV YL R+ YQ+VR Sbjct: 180 VAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRK-YQLVR 222 >ECs1732 [C] COG2181 Nitrate reductase gamma subunit Ecs Escherichia coli O157:H7 Length = 225 Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 118/224 (52%), Positives = 156/224 (69%), Gaps = 2/224 (0%) Query: 1 MQTLNAIVFGWYPYLCLTVFLFGSLVRFDREQYSWRSGSSQLLRRRQLVWGSNLFHVGIL 60 MQ LN F YPY+ VFL GS +R+D QY+WR+ SSQ+L R+ + SNLFH+GIL Sbjct: 1 MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGIL 60 Query: 61 FIFLGHFVGLLTPIWIFDMLGVSHGFKQMLAIVAGGAAGLMCLAGISLLTHRRLFDPRIR 120 IF+GHF G+LTP W+++ + KQ +A+ AGGA+G++CL G LL RRLF PR+R Sbjct: 61 GIFVGHFFGMLTPHWMYEAW-LPIEVKQKMAMFAGGASGVLCLIGGVLLLKRRLFSPRVR 119 Query: 121 ANSSFGDTAILLILFAQLLLGLATIPVSLGHLDGHEMVKFMGWAQGILTLQPGIAANILD 180 A ++ D IL +L Q LGL TIP S H+DG EM+K +GWAQ ++T G + ++ Sbjct: 120 ATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDG 179 Query: 181 VHPIFKAHLVLGMTIFLVFPFTRLVHIWSAPVWYLGRRGYQVVR 224 V IF+ HLVLGMT+FL+FPF+RLVHIWS PV YL R+ YQ+VR Sbjct: 180 VAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRK-YQLVR 222 >PA3872 [C] COG2181 Nitrate reductase gamma subunit Pae Pseudomonas aeruginosa Length = 227 Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 121/228 (53%), Positives = 160/228 (70%), Gaps = 3/228 (1%) Query: 3 TLNAIVFGWYPYLCLTVFLFGSLVRFDREQYSWRSGSSQLLRRRQLVWGSNLFHVGILFI 62 + N + FG YPY+ L + L GS RFD QY+W++GSSQ+L ++ + SNLFHVG+LFI Sbjct: 2 STNLLFFGIYPYVALLICLVGSWARFDLSQYTWKAGSSQMLSKKGMRVYSNLFHVGVLFI 61 Query: 63 FLGHFVGLLTPIWIFDMLGVSHGFKQMLAIVAGGAAGLMCLAGISLLTHRRLFDPRIRAN 122 GHFVGLLTP ++ L +S KQ+LA+V+GG G++C G+S L RRL D R+RA Sbjct: 62 LAGHFVGLLTPASVYHHL-ISTENKQLLAMVSGGFFGVLCFIGLSGLILRRLTDARVRAT 120 Query: 123 SSFGDTAILLILFAQLLLGLATIPVSLGHLDGHEMVKFMGWAQGILTLQPGIAAN-ILDV 181 + D ILL+L+AQL+LGL+TI S H+DG MV WAQ I+TL+P AA I V Sbjct: 121 GNASDLMILLVLYAQLILGLSTIVASTHHMDGSVMVMLAEWAQAIVTLRPLAAAEAIAPV 180 Query: 182 HPIFKAHLVLGMTIFLVFPFTRLVHIWSAPVWYLGRRGYQVVRRSDGA 229 ++K H+ LG+T+F++FPFTRLVHI SAPVWYLGRR YQ+VR+ A Sbjct: 181 GLVYKLHVGLGLTLFVLFPFTRLVHIVSAPVWYLGRR-YQIVRQKRPA 227