BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0052.0003.p (506 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0951 Non COG 880 0.0 PA3874 [C] COG1140 Nitrate reductase beta subunit Pae Pseudomona... 804 0.0 RSp0975 [C] COG1140 Nitrate reductase beta subunit Rso Ralstonia... 801 0.0 STM1763 [C] COG1140 Nitrate reductase beta subunit Sty Salmonell... 792 0.0 STM1578 [C] COG1140 Nitrate reductase beta subunit Sty Salmonell... 786 0.0 >BMEII0951 Non COG Length = 512 Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/507 (79%), Positives = 458/507 (90%), Gaps = 2/507 (0%) Query: 1 MKIRAQIAMVLNLDKCIGCHTCSVTCKNVWTSRQGMEYAWFNNVETKPGIGYPKDWENQA 60 MKIRAQI MVLNLDKCIGCHTCS+TCKNVWT+R+G+EYAWFNNVETKPG+G+PK+WENQ Sbjct: 1 MKIRAQIGMVLNLDKCIGCHTCSITCKNVWTNREGVEYAWFNNVETKPGVGFPKEWENQK 60 Query: 61 RWKGGWKRNRNGSIQPRIGGKWRILANIFANPDLPEIDDYYEPFTFDYQHLQQAPEMKAM 120 +W GGW R +NG I+P++G KWRILA IFANPDLPEIDDYYEPF FDY HLQ A E + M Sbjct: 61 KWNGGWVRKKNGKIEPKMGAKWRILAKIFANPDLPEIDDYYEPFDFDYGHLQTAGESRTM 120 Query: 121 PTARPRSLVSGERLEKIQWGPNWEEILGGEFEKRSQDYNFEGVQKDIYGQFENTFMMYLP 180 PTARPRSL+SGER+EKI+WGPNWEEILGGEF KRS+DYNFEGV+K+IYGQFENTFMMYLP Sbjct: 121 PTARPRSLISGERMEKIEWGPNWEEILGGEFAKRSKDYNFEGVEKEIYGQFENTFMMYLP 180 Query: 181 RLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYNWSSGKS 240 RLCEHCLNP CVA+CPSGAIYKRE+DGIVLIDQ+KCRGWRMCVSGCPYKKIYYNWSSGKS Sbjct: 181 RLCEHCLNPTCVAACPSGAIYKREDDGIVLIDQEKCRGWRMCVSGCPYKKIYYNWSSGKS 240 Query: 241 EKCIFCYPRIEAGQPTVCSETCVGRIRYLGVVLYDADRIAEAASKPDERDLYQAQLDIFL 300 EKCIFCYPRIE+GQPTVCSETCVGRIRYLGV+LYDADRI+EAAS +E+DLYQ QL+IFL Sbjct: 241 EKCIFCYPRIESGQPTVCSETCVGRIRYLGVMLYDADRISEAASTANEQDLYQEQLNIFL 300 Query: 301 DPNDPKVIAEAERQGIPHAWLEAAKASPIWKMAMEWKVAFPLHPEYRTLPMVWYVPPLSP 360 DPNDP VI +A + G+P AWLEAAK SP++KMAM+WK+AFPLHPEYRTLPMVWYVPP SP Sbjct: 301 DPNDPAVIEQARKDGVPDAWLEAAKHSPVYKMAMDWKIAFPLHPEYRTLPMVWYVPPFSP 360 Query: 361 ITSAASAGKIGLDGGMPDVRSLRIPMRYLANLLTAGDEAPVTLALERMMAMRAYMRAKTL 420 + SAA AGK+G+DG +PDVRS+RIP+RYLANLLTAG E PV ALERM+AMRAYMRAKT+ Sbjct: 361 LQSAAQAGKLGMDGPLPDVRSMRIPVRYLANLLTAGKEEPVISALERMLAMRAYMRAKTI 420 Query: 421 DGVVDEAIARRVGLKPAQIDEMYQIMAIANYEDRFVIPTAHRELGADAFDIRGSCGFTFG 480 DGV+DEAIA RVG+ A I+EMY IMAIANYEDRFVIPT+HRE+ DA+D+RGSCGFTFG Sbjct: 421 DGVIDEAIADRVGMSGAMIEEMYNIMAIANYEDRFVIPTSHREITEDAYDVRGSCGFTFG 480 Query: 481 NGCSVGETDTNLFGSPRK--VKNPMEI 505 NGCS G + +LFG+ R+ V+ P +I Sbjct: 481 NGCSGGTSTEDLFGAKRQKVVQTPTDI 507 >PA3874 [C] COG1140 Nitrate reductase beta subunit Pae Pseudomonas aeruginosa Length = 513 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/496 (75%), Positives = 430/496 (86%), Gaps = 2/496 (0%) Query: 1 MKIRAQIAMVLNLDKCIGCHTCSVTCKNVWTSRQGMEYAWFNNVETKPGIGYPKDWENQA 60 MKIR+Q+ MVLNLDKCIGCHTCS+TCKNVWTSR+GMEYAWFNNVETKPGIGYPK+WENQ Sbjct: 1 MKIRSQVGMVLNLDKCIGCHTCSITCKNVWTSREGMEYAWFNNVETKPGIGYPKEWENQE 60 Query: 61 RWKGGWKRNRNGSIQPRIGGKWRILANIFANPDLPEIDDYYEPFTFDYQHLQQAPEMKAM 120 +WKGGW R +GSI+PRIGGK+R+LANIFANPDLPEIDDYYEPF FDYQHL AP+ + Sbjct: 61 KWKGGWVRAADGSIRPRIGGKFRVLANIFANPDLPEIDDYYEPFDFDYQHLHTAPKAEHQ 120 Query: 121 PTARPRSLVSGERLEKIQWGPNWEEILGGEFEKRSQDYNFEGVQKDIYGQFENTFMMYLP 180 P ARPRSLVSG+R+EKI+WGPNWEEILG EF KR +D NF+ VQ DIYG++ENTFMMYLP Sbjct: 121 PVARPRSLVSGQRMEKIEWGPNWEEILGTEFAKRRKDKNFDQVQADIYGEYENTFMMYLP 180 Query: 181 RLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYNWSSGKS 240 RLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMC+SGCPYKKIY+NW SGKS Sbjct: 181 RLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFNWKSGKS 240 Query: 241 EKCIFCYPRIEAGQPTVCSETCVGRIRYLGVVLYDADRIAEAASKPDERDLYQAQLDIFL 300 EKCIFCYPRIEAGQPTVCSETCVGRIRYLGV+LYDADRI E AS +ER+LY+ QL+IFL Sbjct: 241 EKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADRIHEVASCENERELYEKQLEIFL 300 Query: 301 DPNDPKVIAEAERQGIPHAWLEAAKASPIWKMAMEWKVAFPLHPEYRTLPMVWYVPPLSP 360 DP DP VIA+A + G+ + +EAA+ SP++K+AM+WK+A PLHPEYRTLPMVWYVPPLSP Sbjct: 301 DPFDPAVIAQARKDGVADSVIEAAQKSPVYKLAMDWKLALPLHPEYRTLPMVWYVPPLSP 360 Query: 361 ITSAASAGKIGLDGGMPDVRSLRIPMRYLANLLTAGDEAPVTLALERMMAMRAYMRAKTL 420 I +AA+ G IG DG +PDV SLRIP++YLANLLTAGD APV LAL+R++AMRAY RA+ + Sbjct: 361 IQNAAAEGHIGSDGVIPDVESLRIPVQYLANLLTAGDTAPVLLALKRLLAMRAYKRAEHV 420 Query: 421 DGVVDEAIARRVGLKPAQIDEMYQIMAIANYEDRFVIPTAHRELG-ADAFDIRGSCGFTF 479 +G D + +VGL Q++EMY+ +AIANYEDRFVIP+AHRE +DAF R CGF+F Sbjct: 421 EGRQDLEVLAKVGLSVEQVEEMYRYLAIANYEDRFVIPSAHREEALSDAFAERSGCGFSF 480 Query: 480 GNGCSVGETD-TNLFG 494 GNGCS G NLFG Sbjct: 481 GNGCSGGSNSAVNLFG 496 >RSp0975 [C] COG1140 Nitrate reductase beta subunit Rso Ralstonia solanacearum Length = 515 Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/494 (72%), Positives = 428/494 (86%) Query: 1 MKIRAQIAMVLNLDKCIGCHTCSVTCKNVWTSRQGMEYAWFNNVETKPGIGYPKDWENQA 60 MKIRAQ+AMVLNLDKCIGCHTCSVTCKNVWTSR G+EYAWFNNVETKPG+GYPK WENQ Sbjct: 1 MKIRAQVAMVLNLDKCIGCHTCSVTCKNVWTSRDGVEYAWFNNVETKPGVGYPKQWENQD 60 Query: 61 RWKGGWKRNRNGSIQPRIGGKWRILANIFANPDLPEIDDYYEPFTFDYQHLQQAPEMKAM 120 +W+GGW+RN +G + PR GGK +ILAN+FANP+LP+IDDYYEPFT+DY LQ AP + Sbjct: 61 KWQGGWQRNADGKLTPRQGGKLKILANLFANPNLPQIDDYYEPFTYDYARLQNAPLSQTP 120 Query: 121 PTARPRSLVSGERLEKIQWGPNWEEILGGEFEKRSQDYNFEGVQKDIYGQFENTFMMYLP 180 PTARP S ++G+ +EKI+WGPNWE+ L GEF+ R +D FE +QK++Y FENTFMMYLP Sbjct: 121 PTARPVSAITGKTMEKIEWGPNWEDDLAGEFDSRGRDQLFEDIQKEMYSTFENTFMMYLP 180 Query: 181 RLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYNWSSGKS 240 RLCEHCLNP CVASCPSG++YKREEDGIVL+DQDKCRGWRMCVSGCPYKKIY+NW SGK+ Sbjct: 181 RLCEHCLNPTCVASCPSGSVYKREEDGIVLVDQDKCRGWRMCVSGCPYKKIYFNWQSGKA 240 Query: 241 EKCIFCYPRIEAGQPTVCSETCVGRIRYLGVVLYDADRIAEAASKPDERDLYQAQLDIFL 300 EKC+FC+PRIEAGQPTVCSETCVGRIRYLGV+LYDADRI AAS + +DLY AQLD+FL Sbjct: 241 EKCVFCFPRIEAGQPTVCSETCVGRIRYLGVMLYDADRIEAAASVENTQDLYNAQLDVFL 300 Query: 301 DPNDPKVIAEAERQGIPHAWLEAAKASPIWKMAMEWKVAFPLHPEYRTLPMVWYVPPLSP 360 DP+DP + AEA RQGI W++AA SP++KMA EWKVAFPLHPEYRTLPMVWY+PPLSP Sbjct: 301 DPHDPAIQAEALRQGIAQNWIDAAVKSPVYKMACEWKVAFPLHPEYRTLPMVWYIPPLSP 360 Query: 361 ITSAASAGKIGLDGGMPDVRSLRIPMRYLANLLTAGDEAPVTLALERMMAMRAYMRAKTL 420 I SAA +G +G+DG +PDV+SLRIP+RYLANLLTAG+EAPV ALERM+AMRAY RA+T+ Sbjct: 361 IQSAAESGVMGMDGMIPDVKSLRIPVRYLANLLTAGEEAPVVSALERMLAMRAYKRAQTV 420 Query: 421 DGVVDEAIARRVGLKPAQIDEMYQIMAIANYEDRFVIPTAHRELGADAFDIRGSCGFTFG 480 G D + ++VGL PAQ+++MYQIMAIANYEDRFVIP +H+E+ D+FD +G+CGF+FG Sbjct: 421 HGAQDLDVLQQVGLTPAQVEDMYQIMAIANYEDRFVIPASHKEMTQDSFDEKGACGFSFG 480 Query: 481 NGCSVGETDTNLFG 494 NGCS G ++ LFG Sbjct: 481 NGCSGGVSEGTLFG 494 >STM1763 [C] COG1140 Nitrate reductase beta subunit Sty Salmonella typhimurium LT2 Length = 511 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/497 (72%), Positives = 421/497 (84%) Query: 1 MKIRAQIAMVLNLDKCIGCHTCSVTCKNVWTSRQGMEYAWFNNVETKPGIGYPKDWENQA 60 MKIR+Q+ MVLNLDKCIGCHTCSVTCKNVWTSR+GMEYAWFNNVE+KPG+G+P DWENQ Sbjct: 1 MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQE 60 Query: 61 RWKGGWKRNRNGSIQPRIGGKWRILANIFANPDLPEIDDYYEPFTFDYQHLQQAPEMKAM 120 +WKGGW R NG +QPR+G + +L IFANP LP IDDYYEPF +DYQ+L APE K Sbjct: 61 KWKGGWIRKINGKLQPRMGNRALLLGKIFANPHLPGIDDYYEPFDYDYQNLHTAPESKHQ 120 Query: 121 PTARPRSLVSGERLEKIQWGPNWEEILGGEFEKRSQDYNFEGVQKDIYGQFENTFMMYLP 180 P ARPRSL++G+R++KI GPNWEEILGGEFEKR++D NFE +QK +YGQFENTFMMYLP Sbjct: 121 PIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFENMQKAMYGQFENTFMMYLP 180 Query: 181 RLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYNWSSGKS 240 RLCEHCLNPACVA+CPSGAIYKREEDGIVLIDQDKCRGWRMC++GCPYKKIY+NW SGKS Sbjct: 181 RLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKS 240 Query: 241 EKCIFCYPRIEAGQPTVCSETCVGRIRYLGVVLYDADRIAEAASKPDERDLYQAQLDIFL 300 EKCIFCYPRIEAGQPTVCSETCVGRIRYLGV+LYDAD I AAS +E+DLYQ QLD+FL Sbjct: 241 EKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIESAASTENEKDLYQRQLDVFL 300 Query: 301 DPNDPKVIAEAERQGIPHAWLEAAKASPIWKMAMEWKVAFPLHPEYRTLPMVWYVPPLSP 360 DPNDP VI +A + G+P + ++AA+ SP++KMA++WK+A PLHPEYRTLPMVWYVPPLSP Sbjct: 301 DPNDPAVIEQALKDGVPQSVIDAAQQSPVYKMAIDWKLALPLHPEYRTLPMVWYVPPLSP 360 Query: 361 ITSAASAGKIGLDGGMPDVRSLRIPMRYLANLLTAGDEAPVTLALERMMAMRAYMRAKTL 420 I SAA AG++G +G +PDV SLRIP++YLANLLTAGD PV LAL+RM+AMR Y RA+T+ Sbjct: 361 IQSAADAGELGSNGILPDVDSLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETV 420 Query: 421 DGVVDEAIARRVGLKPAQIDEMYQIMAIANYEDRFVIPTAHRELGADAFDIRGSCGFTFG 480 DG VD VGL AQ EMY+ +AIANYEDRFV+P++HREL DAF + CGFTFG Sbjct: 421 DGKVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHRELARDAFPEKSGCGFTFG 480 Query: 481 NGCSVGETDTNLFGSPR 497 +GC +T NLF S R Sbjct: 481 DGCHGSDTKFNLFNSRR 497 >STM1578 [C] COG1140 Nitrate reductase beta subunit Sty Salmonella typhimurium LT2 Length = 514 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/498 (71%), Positives = 423/498 (84%), Gaps = 1/498 (0%) Query: 1 MKIRAQIAMVLNLDKCIGCHTCSVTCKNVWTSRQGMEYAWFNNVETKPGIGYPKDWENQA 60 MKIR+Q+ MVLNLDKCIGCHTCSVTCKNVWT R+GMEYAWFNNVETKPGIGYPK+WE+Q Sbjct: 1 MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTGREGMEYAWFNNVETKPGIGYPKNWEDQQ 60 Query: 61 RWKGGWKRNRNGSIQPRIGGKWRILANIFANPDLPEIDDYYEPFTFDYQHLQQAPEMKAM 120 W+GGW R+ NG I+PR+GGK +++ IFANP +P+IDDYYEPFTFDYQHL APE K Sbjct: 61 EWQGGWVRDVNGKIRPRLGGKMGVISKIFANPVIPQIDDYYEPFTFDYQHLHNAPESKHQ 120 Query: 121 PTARPRSLVSGERLEKIQWGPNWEEILGGEFEKRSQDYNFEGVQKDIYGQFENTFMMYLP 180 PTARPRSL+ G+R++K+ WGPNWEE+LGGEFEKR++D NF+ +QK++YGQFENTFMMYLP Sbjct: 121 PTARPRSLIDGKRMDKVIWGPNWEELLGGEFEKRARDRNFDNIQKEMYGQFENTFMMYLP 180 Query: 181 RLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYNWSSGKS 240 RLCEHCLNP+CVA+CPSGAIYKREEDGIVLIDQDKCRGWR+C+SGCPYKKIY+NW SGKS Sbjct: 181 RLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFNWKSGKS 240 Query: 241 EKCIFCYPRIEAGQPTVCSETCVGRIRYLGVVLYDADRIAEAASKPDERDLYQAQLDIFL 300 EKCIFCYPRIE+GQPTVCSETCVGRIRYLGV+LYDADRI EAAS E DLY+ Q D+FL Sbjct: 241 EKCIFCYPRIESGQPTVCSETCVGRIRYLGVLLYDADRIEEAASTEHETDLYERQCDVFL 300 Query: 301 DPNDPKVIAEAERQGIPHAWLEAAKASPIWKMAMEWKVAFPLHPEYRTLPMVWYVPPLSP 360 +P+DP VI EA +QGIP ++AA+ SP++KMAM+WK+A PLHPEYRTLPMVWYVPPLSP Sbjct: 301 NPHDPAVIEEALKQGIPQNVIDAAQRSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSP 360 Query: 361 ITSAASAGKIGLDGG-MPDVRSLRIPMRYLANLLTAGDEAPVTLALERMMAMRAYMRAKT 419 I S A AG + +G +P V +LRIP++YLAN+L+AGD PV AL+RMMAMR YMR++T Sbjct: 361 IQSYADAGGLPHNGNILPAVETLRIPVQYLANMLSAGDTGPVIRALKRMMAMRHYMRSQT 420 Query: 420 LDGVVDEAIARRVGLKPAQIDEMYQIMAIANYEDRFVIPTAHRELGADAFDIRGSCGFTF 479 ++GV D VGL Q++EMY+ +AIANYEDRFVIPT+HRE+ DAF R CGFTF Sbjct: 421 VEGVTDTRAIEEVGLSIQQVEEMYRYLAIANYEDRFVIPTSHREMARDAFPERNGCGFTF 480 Query: 480 GNGCSVGETDTNLFGSPR 497 G+GC +T NLF S R Sbjct: 481 GDGCHGSDTKFNLFNSSR 498