BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0051.0043.p         (197 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1677 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...   151   9e-37
BS_yddQ [Q] COG1335 Amidases related to nicotinamidase Bsu Bacil...   112   5e-25
SMa1724 [Q] COG1335 Amidases related to nicotinamidase Sme Sinor...   111   8e-25
PA3953 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...    87   3e-17
BS_yrdC [Q] COG1335 Amidases related to nicotinamidase Bsu Bacil...    86   7e-17

>PA1677 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 198

 Score =  151 bits (382), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 84/190 (44%), Positives = 111/190 (58%)

Query: 1   MTSAKTLMQLAGIDLTPPRLGDSCLVLIDIQNEYLAGPLALPDARPAIARAAALLARARE 60
           M    TL+Q++G    P  L  S L++ID Q EY +G L LP    A A    L+  AR 
Sbjct: 1   MPHPLTLLQISGRGYPPAPLRQSTLLIIDAQEEYRSGALRLPGLDAAAAEIGVLVQAARA 60

Query: 61  SGAAIIHIAHKGQPGSLFDRTAERGAIVAPLAPRPGEIVIEKQLPNAFAGTDLNAQLAAT 120
           SG  I+H+ H G  G LFD    RG  +  L P  GE V+EK+LPNAF+GT+L+  L   
Sbjct: 61  SGTPIVHVRHLGIQGGLFDPQGPRGQFLPELQPEAGEKVVEKRLPNAFSGTELHDLLQNH 120

Query: 121 GRKELVLAGFMTHMCVSSTARAALDLGFRTTIDADSCATRDLPDGVGGTIAARLIHDVAL 180
           GR +L++ GFMTH  VS+T RAA D G+R T+   +CATRD+P   GG ++A  +    +
Sbjct: 121 GRLDLIVCGFMTHSSVSTTVRAAKDYGYRCTLADSACATRDIPTLNGGVLSAADLQRAEI 180

Query: 181 AELSDRFAII 190
           A L D FA I
Sbjct: 181 AALGDNFAAI 190


>BS_yddQ [Q] COG1335 Amidases related to nicotinamidase Bsu Bacillus
           subtilis
          Length = 180

 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 94/177 (53%), Gaps = 8/177 (4%)

Query: 25  LVLIDIQNEYL-AGPLALPDARPAIARAAALLARARESGAAIIHIAH--KGQPGSLFDRT 81
           L++IDIQN+Y   G +AL +   A   AA LL+  R +GA + H+ H  +G     F   
Sbjct: 5   LLVIDIQNDYFPNGKMALTNPEKAAQNAAKLLSHFRNTGAPVFHVQHITEGNIAHFFHPN 64

Query: 82  AERGAIVAPLAPRPGEIVIEKQLPNAFAGTDLNAQLAATGRKELVLAGFMTHMCVSSTAR 141
            E   I   + P   E VI K +PN+F  TDLN +L   G KELV+ G M+HMC+ +T R
Sbjct: 65  TEGVEIHESVRPLEKETVIVKHMPNSFFNTDLNGKLQEEGVKELVVCGMMSHMCIDATVR 124

Query: 142 AALDLGFRTTIDADSCATRDL--PDGVGGTIAARLIHDVALAELSDRFAIIARGNAL 196
           +A++ G+   +  D+CAT  L   D +   + A  +H   +A L+  +A +    A 
Sbjct: 125 SAVEHGYVCQVVEDACATTTLQIEDKI---VPAEHVHYAFMAALNGVYATVKTTEAF 178


>SMa1724 [Q] COG1335 Amidases related to nicotinamidase Sme Sinorhizobium
           meliloti
          Length = 260

 Score =  111 bits (278), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 101/162 (62%), Gaps = 3/162 (1%)

Query: 25  LVLIDIQNEYLA-GPLALPDARPAIARAAALLARARESGAAIIHIAHKGQPGSLFDRTAE 83
           ++++D+QN+YL  G   L     A+  AA L+  AR SG  +++I H+   G+ F  +  
Sbjct: 85  IIVVDLQNDYLTTGKFPLVGIDKALENAARLVDAARRSGDLVVNIRHESPAGAPFFVSGT 144

Query: 84  RGAIVAP-LAPRPGEIVIEKQLPNAFAGTDLNAQLAATGRKELVLAGFMTHMCVSSTARA 142
            GA + P +AP+ GE V+ K+ PN+F  T+L + L++ G  E+ + G M+HMC+ +TARA
Sbjct: 145 EGAEIIPNIAPQHGEAVVTKRYPNSFRETELASLLSSAGVDEVTVIGAMSHMCIDATARA 204

Query: 143 ALDLGFRTTIDADSCATRDLPDGVGGTIAARLIHDVALAELS 184
           A DLG++TT+  D+CATRDL +  G  + A  +H   ++ L+
Sbjct: 205 ASDLGYKTTVVEDACATRDL-EFRGEVVPAAKVHAAYMSALA 245


>PA3953 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 193

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 3/175 (1%)

Query: 24  CLVLIDIQNEYLAGPLALPDARPAIARAAALLARARESGAAIIHIAH-KGQPGSLFDRTA 82
            L+++D+Q       L   +   A AR   LLA  R +G  ++H+ H   QPGS F    
Sbjct: 14  ALLIVDLQRGMQRHDLPPRNNPGAEARIVELLAAWRAAGWPVVHVRHVSRQPGSPFA-PG 72

Query: 83  ERGAIVAP-LAPRPGEIVIEKQLPNAFAGTDLNAQLAATGRKELVLAGFMTHMCVSSTAR 141
           + G    P LAPR  E V EK +P+AF  + L   L     +++ L G  T   V ++AR
Sbjct: 73  QPGVEFQPALAPRDDEAVFEKNVPDAFINSGLQRWLHVRDIRQVALVGVATENSVEASAR 132

Query: 142 AALDLGFRTTIDADSCATRDLPDGVGGTIAARLIHDVALAELSDRFAIIARGNAL 196
           +A +LGF+T + AD+C T   PD  G   +A  +H +ALA L   +A++ R   L
Sbjct: 133 SAGNLGFQTWVVADACFTFAKPDFHGTPRSADEVHAMALANLHGEYAVVLRAAEL 187


>BS_yrdC [Q] COG1335 Amidases related to nicotinamidase Bsu Bacillus
           subtilis
          Length = 187

 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 1/173 (0%)

Query: 25  LVLIDIQNEYLAGPLALPDARPAIARAAALLARARESGAAIIHIAHKG-QPGSLFDRTAE 83
           L+++D+Q  +        +   A    + +L   RE G  +I+I H   +P SLF    E
Sbjct: 7   LIIVDVQKAFDDKKWGERNNVKAEENISKILELWREKGWTVIYIQHTSDKPHSLFHPKNE 66

Query: 84  RGAIVAPLAPRPGEIVIEKQLPNAFAGTDLNAQLAATGRKELVLAGFMTHMCVSSTARAA 143
             AI   + P   E++I K + ++F GT+L   L       +V+ G  T  CVS+T R +
Sbjct: 67  GFAIKEIVKPMDEEVIITKTVNSSFIGTNLEEFLKLNEITTVVITGLTTPHCVSTTTRMS 126

Query: 144 LDLGFRTTIDADSCATRDLPDGVGGTIAARLIHDVALAELSDRFAIIARGNAL 196
            +LGF T + +D+ A   + D       A  IH+++LA L D FA I   + L
Sbjct: 127 GNLGFDTYLISDATAAFGMRDQNDTYYDAATIHNISLATLHDEFATILTTDQL 179