BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0027.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1607 [K] COG1733 Predicted transcriptional regulators Pae Pseu...   153   1e-37
SMa1960 [K] COG1733 Predicted transcriptional regulators Sme Sin...   127   9e-30
mll2592 [K] COG1733 Predicted transcriptional regulators Mlo Mes...   112   2e-25
PA1374 [K] COG1733 Predicted transcriptional regulators Pae Pseu...   110   1e-24
PA0116 [K] COG1733 Predicted transcriptional regulators Pae Pseu...   103   2e-22

>PA1607 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 146

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 104/145 (71%), Gaps = 2/145 (1%)

Query: 1   MKRTAFAKAECPVARALDAIGDWWSLLIVRDAFDGLRRFGDFQKNLGIAKGMLTTRLRTL 60
           +KRT+  +A CPVAR LD IGD WS+LIVRDAF+GL RFG+FQK+LG+AK +L  RLR L
Sbjct: 2   VKRTSHKQASCPVARPLDVIGDGWSMLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNL 61

Query: 61  VATGVLEQVAASDGSAYQEYVLTKRGHDLFPIVVGLRQWGEAHLFARGEPHSVLLDQ-AG 119
           V  GV+  V A  GS +QEY LT +G  LFP++V +RQWGE + FA  E H  L+++ +G
Sbjct: 62  VEHGVMVAVPAESGS-HQEYRLTDKGRALFPLLVAIRQWGEDYFFAPDESHVRLVERDSG 120

Query: 120 QAVGQLMLPSKSGKPLSWADTKVSK 144
           Q V +L + +  G PL+  DT+VS+
Sbjct: 121 QPVPRLQVRAGDGSPLAAEDTRVSR 145


>SMa1960 [K] COG1733 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 125

 Score =  127 bits (319), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 89/121 (73%)

Query: 26  LLIVRDAFDGLRRFGDFQKNLGIAKGMLTTRLRTLVATGVLEQVAASDGSAYQEYVLTKR 85
           +LIVRDAFDG+ RFG+FQK+LGIA+ +LT RLRTLV  G+LE V  S+G A QEY LT+ 
Sbjct: 1   MLIVRDAFDGVTRFGEFQKSLGIARNILTARLRTLVDRGILEAVPISEGGARQEYRLTQM 60

Query: 86  GHDLFPIVVGLRQWGEAHLFARGEPHSVLLDQAGQAVGQLMLPSKSGKPLSWADTKVSKV 145
           G DLFP++V LRQ+GE HLFA  E  S L++++     +L + ++ G+P++  +T + K+
Sbjct: 61  GRDLFPVMVALRQFGERHLFAPNEKRSKLVERSTGRPIRLDVLTEDGRPVNSEETVILKI 120

Query: 146 A 146
           +
Sbjct: 121 S 121


>mll2592 [K] COG1733 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 182

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 85/138 (61%), Gaps = 2/138 (1%)

Query: 3   RTAFAKAECPVARALDAIGDWWSLLIVRDAFDGLRRFGDFQKNLGIAKGMLTTRLRTLVA 62
           +T+F    CP+AR+LD +G+WWS+L++RDAF GL RF  FQK+L IA  +LT RL +LV 
Sbjct: 4   KTSFETRPCPIARSLDDVGEWWSILLLRDAFQGLTRFDQFQKSLEIAPNILTRRLNSLVE 63

Query: 63  TGVLEQVAASDGSAYQEYVLTKRGHDLFPIVVGLRQWGEAHLFARGEPHSVLLDQA-GQA 121
            G+ E+ A  +     EYVLT +  D  P+++ L  WG  HL   G P  V++D+  G+ 
Sbjct: 64  RGLFEKRAYCERPLRHEYVLTAKARDFRPVLLSLLAWGNKHLAPEG-PSLVVVDKTDGRW 122

Query: 122 VGQLMLPSKSGKPLSWAD 139
              +++  ++G+ L   D
Sbjct: 123 AEPVLVDRQTGRELDGGD 140


>PA1374 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 168

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 2/149 (1%)

Query: 1   MKRTAFAKAECPVARALDAIGDWWSLLIVRDAFDGLRRFGDFQKNLGIAKGMLTTRLRTL 60
           M+R  FA AECP+AR+L+ +G+WWS+LI+RDA  GLRRF +F ++L IA  MLT RL  L
Sbjct: 1   MQRKTFADAECPIARSLERVGEWWSILIMRDALQGLRRFDEFSRSLDIAPNMLTRRLNAL 60

Query: 61  VATGVLEQVAASDGSAYQEYVLTKRGHDLFPIVVGLRQWGEAHLFARGEPHSVLLDQAGQ 120
           V  G+LE+   S      +YV T +G D   +++    WG  H    G+   ++   +G+
Sbjct: 61  VEAGLLERQPYSQRPLRYQYVPTAKGEDFRVVLMAFVAWGNRHYAEEGQSVQLVERTSGR 120

Query: 121 AVGQLMLPSKSGK--PLSWADTKVSKVAA 147
            V   M     G+  PL     +    A+
Sbjct: 121 PVRSFMAALADGRTVPLEQCTVQAGPAAS 149


>PA0116 [K] COG1733 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 157

 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 85/145 (58%), Gaps = 1/145 (0%)

Query: 1   MKRTAFAKAECPVARALDAIGDWWSLLIVRDAFDGLRRFGDFQKNLGIAKGMLTTRLRTL 60
           M+    ++  C +AR L  +GD W+LL++RD F G+RRF DF+++LG+ + +L  RL+ L
Sbjct: 1   MRWEELSEQPCSLARVLAILGDRWTLLVLRDCFLGVRRFDDFERSLGVTRHVLADRLKRL 60

Query: 61  VATGVLEQVAASDGSAYQEYVLTKRGHDLFPIVVGLRQWGEAHLF-ARGEPHSVLLDQAG 119
           V   +L +V   +    +EY LT++G +L+P ++ L  WG+ HL    G P   +    G
Sbjct: 61  VEAEILAKVPYQERPLREEYRLTEKGMELYPAILSLVNWGDRHLAGVEGPPLEHVHKHCG 120

Query: 120 QAVGQLMLPSKSGKPLSWADTKVSK 144
           Q +  +++ S+ G+PL   D  V +
Sbjct: 121 QHMHGVLVCSECGEPLHARDVTVRE 145