BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0026.p         (121 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc3872 [GEPR] COG0477 Permeases of the major facilitator superf...    75   4e-14
ECs3543 [GEPR] COG0477 Permeases of the major facilitator superf...    74   1e-13
Z3982 [GEPR] COG0477 Permeases of the major facilitator superfam...    74   1e-13
b2681m [GEPR] COG0477 Permeases of the major facilitator superfa...    74   1e-13
CAC0560 [GEPR] COG0477 Permeases of the major facilitator superf...    73   2e-13

>AGc3872 [GEPR] COG0477 Permeases of the major facilitator superfamily Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 405

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 48/73 (65%)

Query: 24 DTTARALSPAVVLLFAAACGLSVANIYFAQPLLDTMAQDLSITPAVIGGVVTLTQVGYAF 83
          D  A ++SPA+  L A ACGL  AN+Y+ QPL   +  +L ++    G +VTLTQ+GY  
Sbjct: 14 DVEATSISPALTFLLATACGLIAANLYYGQPLAGIIGTELGLSAGATGLIVTLTQIGYGI 73

Query: 84 GLMLIVPLGDLWD 96
          GL+ +VPLGDL +
Sbjct: 74 GLLFVVPLGDLVE 86


>ECs3543 [GEPR] COG0477 Permeases of the major facilitator superfamily Ecs
          Escherichia coli O157:H7
          Length = 394

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 54/67 (80%)

Query: 30 LSPAVVLLFAAACGLSVANIYFAQPLLDTMAQDLSITPAVIGGVVTLTQVGYAFGLMLIV 89
          LSPA+++L + A GL+VA+ Y+AQPLLDT+A++ S++ +  G +VT  Q+GYA GL+ +V
Sbjct: 8  LSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLSASSAGFIVTAAQLGYAAGLLFLV 67

Query: 90 PLGDLWD 96
          PLGD+++
Sbjct: 68 PLGDMFE 74


>Z3982 [GEPR] COG0477 Permeases of the major facilitator superfamily EcZ
          Escherichia coli O157:H7 EDL933
          Length = 394

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 54/67 (80%)

Query: 30 LSPAVVLLFAAACGLSVANIYFAQPLLDTMAQDLSITPAVIGGVVTLTQVGYAFGLMLIV 89
          LSPA+++L + A GL+VA+ Y+AQPLLDT+A++ S++ +  G +VT  Q+GYA GL+ +V
Sbjct: 8  LSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLSASSAGFIVTAAQLGYAAGLLFLV 67

Query: 90 PLGDLWD 96
          PLGD+++
Sbjct: 68 PLGDMFE 74


>b2681m [GEPR] COG0477 Permeases of the major facilitator superfamily Eco
          Escherichia coli K12
          Length = 392

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 54/67 (80%)

Query: 30 LSPAVVLLFAAACGLSVANIYFAQPLLDTMAQDLSITPAVIGGVVTLTQVGYAFGLMLIV 89
          LSPA+++L + A GL+VA+ Y+AQPLLDT+A++ S++ +  G +VT  Q+GYA GL+ +V
Sbjct: 8  LSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLSASSAGFIVTAAQLGYAAGLLFLV 67

Query: 90 PLGDLWD 96
          PLGD+++
Sbjct: 68 PLGDMFE 74


>CAC0560 [GEPR] COG0477 Permeases of the major facilitator superfamily Cac
           Clostridium acetobutylicum
          Length = 441

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 47/65 (72%)

Query: 30  LSPAVVLLFAAACGLSVANIYFAQPLLDTMAQDLSITPAVIGGVVTLTQVGYAFGLMLIV 89
           L+  ++ + A  C ++VAN+Y+ QPLL  +A+  ++T A  G VVTLTQVGYA G++ +V
Sbjct: 48  LNKFIIFIMALTCTVTVANLYYCQPLLGQIAKSFNVTEANAGFVVTLTQVGYALGMLFLV 107

Query: 90  PLGDL 94
           PLGD+
Sbjct: 108 PLGDI 112