BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0048.0017.p         (173 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA4521 [O] COG1765 Predicted redox protein, regulator of disulfi...    77   1e-14
PH1621 [O] COG1765 Predicted redox protein, regulator of disulfi...    70   2e-12
PAB2001 [O] COG1765 Predicted redox protein, regulator of disulf...    62   5e-10

>MA4521 [O] COG1765 Predicted redox protein, regulator of disulfide bond
           formation Mac Methanosarcina acetivorans str.C2A
          Length = 218

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 9   FADTQQALGADPAQAQAV--FQAHSQLGD-GVNSSVTVR-----QFNVSVDEPPALGGED 60
           F++T Q    DP++ + V  F+ + ++G  G   S  ++     +F +  DEP ALGG  
Sbjct: 41  FSETLQKARNDPSKTKKVIEFEGNWEIGKTGPQFSTKIKTEKGGEFLIQSDEPIALGGSG 100

Query: 61  TAPNPVEYILAALGSCQEITYRLYADALGIPLNGVSVKLSGAIDLRGFFSV--DPNVRAG 118
           TAPNPV+Y L  + SC   +   +    GI LN + +K+   +DL   F +  +P +   
Sbjct: 101 TAPNPVQYGLYGIASCFAASLAKWTAMEGIVLNQLKIKVRADMDLSASFGIFQEPAIPI- 159

Query: 119 FQQIEAEVAIDSPASAADIARLKETVDRHCPVLDILRNPTPVDLKLRTG 167
           ++ I+ E+ IDS  S  +I R  E   + CP    L      D+  + G
Sbjct: 160 YECIKFEIVIDSGMSMEEIKRFNEIAKQRCPCYYCLTAAIVPDIVFKKG 208


>PH1621 [O] COG1765 Predicted redox protein, regulator of disulfide bond
           formation Pho Pyrococcus horikoshii
          Length = 143

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 9/136 (6%)

Query: 33  LGDGVNSSVTVRQ---FNVSVDEPPALGGEDTAPNPVEYILAALGSCQEITYRLYADALG 89
           +G  V+S+ T+ +   F + +D+   LGGE   P+P++Y LAAL  C  I   + A  +G
Sbjct: 12  IGKAVSSTKTLIKAGNFEIYIDK---LGGE--YPSPLDYTLAALAGCINIVGHMVAKEMG 66

Query: 90  IPLNGVSVKLSGAIDLRGFFSVDPNVRAGFQQIEAEVAIDSPASAADIARLKETVDRHCP 149
             +N + ++++G  +   F   D + RAGF+ IE  + +D+      +    + V+  CP
Sbjct: 67  FEINSLEIEVNGTFNPAKFKGFDGD-RAGFKSIEVTIRVDARVDDETLKEWIKRVEERCP 125

Query: 150 VLDILRNPTPVDLKLR 165
           V D L N TP ++ ++
Sbjct: 126 VSDNLINETPTEITVK 141


>PAB2001 [O] COG1765 Predicted redox protein, regulator of disulfide bond
           formation Pab Pyrococcus abyssi
          Length = 143

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 6/122 (4%)

Query: 41  VTVRQFNVSVDEPPALGGEDTAPNPVEYILAALGSCQEITYRLYADALGIPLNGVSVKLS 100
           V    F + VD+   LGGE   P P++Y LAAL  C  I   + A  +G  +  + ++++
Sbjct: 23  VKTENFEIMVDK---LGGEH--PCPLDYTLAALAGCLNIVGHMVAKDMGFNIEELEIEVT 77

Query: 101 GAIDLRGFFSVDPNVRAGFQQIEAEVAIDSPASAADIARLKETVDRHCPVLDILRNPTPV 160
           G  +   F  +D   RAGF+ ++A + + +      +    + V+  CPV D L N TP 
Sbjct: 78  GIFNPAKFMGLDGE-RAGFKSVKAIIRVKADVDEEKLKEWLKKVEERCPVSDNLTNLTPT 136

Query: 161 DL 162
           ++
Sbjct: 137 EV 138