BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0005.p (288 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0109 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate tra... 96 9e-20 SMb21526 [P] COG4521 ABC-type taurine transport system, periplas... 67 5e-11 AGc3458 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 64 5e-10 PA3938 [P] COG4521 ABC-type taurine transport system, periplasmi... 60 7e-09 mlr4517 Non COG 59 1e-08 >BMEII0109 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Bme Brucella melitensis Length = 319 Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 10/211 (4%) Query: 1 MDRRQFLTTTAGLALGSFTAAAPAIAQAKT-KVRVGYLHTVAVDGQIWTGMDRGSFEKQG 59 M RR FL + L P++A A VRVGY+ ++G +EK G Sbjct: 1 MKRRTFLAMSLALTF------LPSVALADNIPVRVGYIADYWGTSITAIASEKGLWEKHG 54 Query: 60 LDLELRQFNTGLEIFQALIGGSLDVLATGAVLSNFPARGQGKVFLINDIEVATAQLWVRG 119 LD + R F G QAL GSLD G PA G+ K+ IN + + V Sbjct: 55 LDADTRVFTNGPIQVQALGAGSLDFGYIGPGALWLPASGKAKIVAINSVGFSDR---VIA 111 Query: 120 DQGIKSFEDLKGKRIATATGTTAHVFLDTALRANKVDPKEVELVNQTMPAAVTAFISGAV 179 +G KS DLKGK+I GT+ + L AL + +V+++ V+AF S + Sbjct: 112 QEGFKSMADLKGKKIGVPEGTSGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQI 171 Query: 180 PAVALWVPFNVTVRDKVPGAVKLADASAYYP 210 A +W P T+++ VPG V+LA S ++P Sbjct: 172 DAAGIWYPLIGTIKEHVPGMVELAANSDFFP 202 >SMb21526 [P] COG4521 ABC-type taurine transport system, periplasmic component Sme Sinorhizobium meliloti Length = 339 Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 13/190 (6%) Query: 5 QFLTTTAGLALGSFTAAAPAIAQAKTKVRVGYLHTVAVDGQIWTGMDRGSFE----KQGL 60 + L+ +A G T+ A AQA+T V VGY V G + + G F+ + G Sbjct: 8 KHLSGAVAIAAGVLTSFA---AQAETSVVVGYQQIV---GPFISAIADGRFDAAAKEAGY 61 Query: 61 DLELRQFNTGLEIFQALIGGSLDVLATGAVLSNFPA-RG-QGKVFLINDIEVATAQLWVR 118 ++ RQF++G +I AL G++ + G+ + A RG + ++F I D + L R Sbjct: 62 TIDWRQFSSGGDISTALASGNVPIGVIGSTGTTAAASRGVELELFWILDNIGKSEALVAR 121 Query: 119 GDQGIKSFEDLKGKRIATATGTTAHVFLDTAL-RANKVDPKEVELVNQTMPAAVTAFISG 177 GI+ EDLKGK + +T+H L L + K DP+EV ++N P V A+ G Sbjct: 122 EGSGIEKPEDLKGKNVGVPFVSTSHFHLLVGLEQVWKTDPREVNILNMKPPQIVAAWQRG 181 Query: 178 AVPAVALWVP 187 + A +W P Sbjct: 182 DIDAAYVWPP 191 >AGc3458 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 383 Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 11/203 (5%) Query: 1 MDRRQFLTTTAGLALGSFTAAAPAIAQAKTKVRVGYLHTVAVDGQIWTGMDRGSFE---- 56 + RR L AG F A T +R+G+ +G I +G+ E Sbjct: 64 ITRRGTLGLLAGSTGAVFLPHIRRAGAATTTLRIGWQK----NGVIALAKSQGALEALLK 119 Query: 57 KQGLDLELRQFNTGLEIFQALIGGSLDVLATGAVLSNFPARGQGKVFLINDIEVAT--AQ 114 +G++++ +F++G + +AL G+LD+ TG V F G + + + A + Sbjct: 120 DRGIEVKWSEFSSGPPLLEALGAGALDIGPTGDVPPLFAQAAGGNLRYVGTYKAAAGGSA 179 Query: 115 LWVRGDQGIKSFEDLKGKRIATATGTTAHVFLDTALRANKVDPKEVELVNQTMPAAVTAF 174 + V+ D +K+ EDLKGK++A G++AH ALR + ++ V+ P A AF Sbjct: 180 ILVQKDSPLKTLEDLKGKKVAFKRGSSAHNVTVKALRKAGLTLSDITPVDLAPPDAAAAF 239 Query: 175 ISGAVPAVALWVPFNVTVRDKVP 197 SG++ A ++W P+ V +K P Sbjct: 240 RSGSIDAWSIWDPY-FAVAEKEP 261 >PA3938 [P] COG4521 ABC-type taurine transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 337 Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 25/187 (13%) Query: 11 AGLALGSFTAAAPAIAQAKTKVRVGYLHTVAVDGQIWTGMD-------RGSFEKQ-GLDL 62 A LA S + AA A + VGY TG+D G +EK G + Sbjct: 12 AALAFASLSVAAQA-----ADITVGYQ----------TGIDPTKVPQADGLYEKAIGEKI 56 Query: 63 ELRQFNTGLEIFQALIGGSLDVLATGAV-LSNFPARGQGKVFLINDIEVATAQ-LWVRGD 120 + R+FN+G E+ AL G L + G+ L+ +R V I ++ A+ L VR Sbjct: 57 DWRRFNSGPEVIAALASGDLQLGNIGSSPLAAATSRKLPIVAFIVSAQINAAEALVVRNG 116 Query: 121 QGIKSFEDLKGKRIATATGTTAHVFLDTALRANKVDPKEVELVNQTMPAAVTAFISGAVP 180 GI EDL GK IAT +T+H L AL+ ++DP +V++VN A+ G + Sbjct: 117 SGIGKPEDLVGKTIATPFVSTSHYSLLGALKHWQIDPSKVKIVNLNPAEIAAAWRRGDID 176 Query: 181 AVALWVP 187 +W P Sbjct: 177 GAFVWSP 183 >mlr4517 Non COG Length = 337 Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%) Query: 23 PAIAQAKTKVRVGYLHTVAVDGQIWTGMDRGSFEKQ-GLDLELRQFNTGLEIFQALIGGS 81 PA+A K+ +GY TV ++ G++EK ++ R+F++G ++ A+ GS Sbjct: 24 PALAD-DLKITIGY-QTVVEPSKV--PQADGAYEKSTKATIDWRKFDSGADVIAAVASGS 79 Query: 82 LDVLATGAVLSNFPARGQGKVFLINDIEVA-----TAQLWVRGDQGIKSFEDLKGKRIAT 136 +D+ G V S+ A + I I V + L R GI+ DL GK++A Sbjct: 80 VDI---GYVGSSPLAAAASRELPIQTIFVVGLIGPSEALVARNGAGIEKLADLAGKKVAV 136 Query: 137 ATGTTAHVFLDTALRANKVDPKEVELVNQTMPAAVTAFISGAVPAVALWVP 187 +T H L AL+ VD K V+++N P AF G + A +W P Sbjct: 137 PFVSTTHYSLLAALKHENVDAKSVQILNLRPPEIAAAFARGDIDAAYVWDP 187