BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0047.0018.p         (164 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll5316 [T] COG0589 Universal stress protein UspA and related nu...   152   3e-37
AGc613 [T] COG0589 Universal stress protein UspA and related nuc...   138   6e-33
SMc01120 [T] COG0589 Universal stress protein UspA and related n...   136   2e-32
BMEI1807 [T] COG0589 Universal stress protein UspA and related n...   131   7e-31

>mll5316 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Mlo Mesorhizobium loti
          Length = 163

 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 104/164 (63%), Gaps = 1/164 (0%)

Query: 1   MTTQRRSYETGHKPKCLVIVDDTAEWDRAVYYASRWAIRVGGGVVMLRVIETEDQNQQWL 60
           M ++R S E GH+ K L I+DDT E +RAV YAS+ A    G +V+L VI   D  Q WL
Sbjct: 1   MVSKRLSREAGHRRKFLTIIDDTPECERAVAYASKRAQSTSGTLVLLYVI-VPDDFQHWL 59

Query: 61  GVADIMRAEAEEAANEALDRAAGRANGIAAITPERVIREGDPIEQILDVIDKDVDIAALV 120
           GV  IMR EA   A  ALD  A +      I PE V+REG P E+I  +I++D DIA LV
Sbjct: 60  GVEKIMREEANATARAALDGYANKVRQKLGIEPEMVVREGKPTEEIHKLIEEDQDIAILV 119

Query: 121 LAANPGAEGPGPIITTMAKTMGAFPIPVTIVPGGLTDAEIDALS 164
           LAA  G EGPGP++  +A    AFPIPVT+VP  L+D EID+L+
Sbjct: 120 LAAGAGKEGPGPLVGAVAGKGAAFPIPVTVVPQNLSDEEIDSLA 163


>AGc613 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 163

 Score =  138 bits (347), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 104/164 (63%), Gaps = 1/164 (0%)

Query: 1   MTTQRRSYETGHKPKCLVIVDDTAEWDRAVYYASRWAIRVGGGVVMLRVIETEDQNQQWL 60
           M + R S   GH+ K L ++DDT E +RAV+YA R A    GG+V+L +I  E   QQWL
Sbjct: 1   MVSTRLSRLEGHRRKFLAVIDDTPECERAVHYAGRRAKNSNGGLVLLYMI-PEGDFQQWL 59

Query: 61  GVADIMRAEAEEAANEALDRAAGRANGIAAITPERVIREGDPIEQILDVIDKDVDIAALV 120
           GV  IMRAEA E A   L + A +      I PE VIREG   EQI  +I++D DIA LV
Sbjct: 60  GVEQIMRAEAREEAEATLAKVAQKVRETIGIEPESVIREGSATEQIHGLIEEDRDIAILV 119

Query: 121 LAANPGAEGPGPIITTMAKTMGAFPIPVTIVPGGLTDAEIDALS 164
           LAA    EGPGP+++++A    AFPIPVT++P  LTD EIDAL 
Sbjct: 120 LAAGSTKEGPGPLVSSIAGRGAAFPIPVTVLPDTLTDEEIDALC 163


>SMc01120 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Sme Sinorhizobium meliloti
          Length = 155

 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 11  GHKPKCLVIVDDTAEWDRAVYYASRWAIRVGGGVVMLRVIETEDQNQQWLGVADIMRAEA 70
           GH+ K + ++DDT E  RAV+YA   A    GG+V+L VI   D  QQWLGV +IMRAEA
Sbjct: 3   GHRRKFMAVIDDTPECGRAVHYAGMRAKNSNGGLVLLYVIADGD-FQQWLGVEEIMRAEA 61

Query: 71  EEAANEALDRAAGRANGIAAITPERVIREGDPIEQILDVIDKDVDIAALVLAANPGAEGP 130
            + A   L + A        I PE VIREG   EQI   I++D DIA LVLAA    EGP
Sbjct: 62  RDEAEATLAKIAQTVRERIGIEPEIVIREGIATEQIHAAIEEDRDIAILVLAAGSAKEGP 121

Query: 131 GPIITTMAKTMGAFPIPVTIVPGGLTDAEIDALS 164
           GP+++++A    AFPIPVT++P  LTD EIDAL+
Sbjct: 122 GPLVSSIAGKAAAFPIPVTVIPDLLTDEEIDALT 155


>BMEI1807 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Bme Brucella melitensis
          Length = 179

 Score =  131 bits (329), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 108/164 (65%), Gaps = 2/164 (1%)

Query: 1   MTTQRRSYETGHKPKCLVIVDDTAEWDRAVYYASRWAIRVGGGVVMLRVIETEDQNQQWL 60
           M ++R S E GH+ K L ++D+T E  RAV YA+R A    G +VML VI+   + QQ L
Sbjct: 18  MVSRRLSREAGHRRKFLAVIDETPECGRAVAYAARRARNTNGSLVMLFVIDN-SEFQQIL 76

Query: 61  GVADIMRAEAEEAANEALDRAAGRANGIAAITPERVIREGDPIEQILDVIDKDVDIAALV 120
           GV +IMRAEAEE A  AL++ A        I PE +IREG   E++L ++++D DIA LV
Sbjct: 77  GVGEIMRAEAEERARTALEKFAANVRAEQGIDPELIIREGRTAEELLSLVEEDQDIAILV 136

Query: 121 LAANPGAEGPGPIITTMAKTMGAFPIPVTIVPGGLTDAEIDALS 164
           LAA    EGPGP++ ++A     FPIPVT+VP GL+D +IDAL+
Sbjct: 137 LAAGASKEGPGPLVQSLAGR-AQFPIPVTVVPAGLSDDDIDALT 179