BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0047.0002.p (538 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02912 [K] COG0195 Transcription elongation factor Sme Sinorhi... 780 0.0 BMEI1967 [K] COG0195 Transcription elongation factor Bme Brucell... 780 0.0 AGc136 [K] COG0195 Transcription elongation factor Atu Agrobacte... 768 0.0 mlr5551 [K] COG0195 Transcription elongation factor Mlo Mesorhiz... 760 0.0 CC0044 [K] COG0195 Transcription elongation factor Ccr Caulobact... 635 0.0 >SMc02912 [K] COG0195 Transcription elongation factor Sme Sinorhizobium meliloti Length = 542 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/523 (73%), Positives = 449/523 (85%), Gaps = 3/523 (0%) Query: 1 MAVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGE 60 MAVSAN+LELLQIADAVAREK IDR IV+AAM DAI KAAR+RYGSE+++ A+I+ K GE Sbjct: 1 MAVSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINPKTGE 60 Query: 61 LRLTRHMLVVDVVENSSNQISLHDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIV 120 +RL R + VV+ E+ S QI + A+ NP A++GD IAD LPP+++GRIAAQSAKQVIV Sbjct: 61 IRLQRLLEVVEKAEDYSTQIPIELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIV 120 Query: 121 QKVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNG 180 QKVREAERDRQY EFKDR+G+IVNG VKRVEYG+VIVDLGRGE I+RRDEM+PRE R G Sbjct: 121 QKVREAERDRQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYG 180 Query: 181 DRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI 240 DRVRA+++DVRRE RGPQIFLSRTHPQFM KLF EVPEIYDGI++IK+VARDPGSRAKI Sbjct: 181 DRVRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKI 240 Query: 241 GVISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKV 300 V+S DSS+DPVGACVGMRGSRVQAVV ELQGEKIDIIPWSPD A+F+VNAL PAEVAKV Sbjct: 241 AVVSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVAKV 300 Query: 301 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN 360 V+DED ERIEVVVPD QLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQ +F Sbjct: 301 VLDEDAERIEVVVPD--EQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNE 358 Query: 361 STRVFMEALNVDEVVGQLLASEGFTSVEELALVDVKELAGIEGFDEETANELQTRAREYL 420 T++FM+AL+VDE+VGQ+LASEGF VEELA V++ E++ IEGFDE+TANELQTRAREYL Sbjct: 359 RTQLFMDALDVDEMVGQVLASEGFAQVEELAYVELDEISSIEGFDEDTANELQTRAREYL 418 Query: 421 EQLEAELEAKRKELGVEDAMKDVPGITGKMLVKLGENDVKTVEDLAGCATDDLVGWTERK 480 E++EAE++AKRKELGV D ++ + G+T +MLV LGE +KT+ED AGCA DDLVGWTERK Sbjct: 419 EKIEAEMDAKRKELGVSDELRTIDGLTSQMLVALGEEGIKTIEDFAGCAADDLVGWTERK 478 Query: 481 EGGEPTKHAGFLDGIEISRDEAEALIMQARLKAGWITEADLAK 523 + GE + G E++R+EAE +I+QARL AGWITE DL K Sbjct: 479 D-GETKRFEGIFSKFEVTREEAETMIVQARLAAGWITEEDLVK 520 >BMEI1967 [K] COG0195 Transcription elongation factor Bme Brucella melitensis Length = 537 Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/527 (73%), Positives = 456/527 (86%), Gaps = 3/527 (0%) Query: 1 MAVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGE 60 MAVSAN+LELLQIADAVAREKSIDR IV+AAM DAI KAAR+RYG E+++ A+I+AK GE Sbjct: 1 MAVSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGE 60 Query: 61 LRLTRHMLVVDVVENSSNQISLHDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIV 120 ++L R + VV+ VE+ + QISL A+ NP AQVGD IAD LPP+++GRIAAQSAKQVIV Sbjct: 61 IKLQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIV 120 Query: 121 QKVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNG 180 QKVREAERDRQY E+KDR+G+IVNG VKRVEYG+VIVDLGRGEAIVRRDE++PRE FR G Sbjct: 121 QKVREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYG 180 Query: 181 DRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI 240 DR+RAY++DVRRE RGPQIFLSRTHPQFMAKLF EVPEIYDGI+EIK+VARDPGSRAKI Sbjct: 181 DRIRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKI 240 Query: 241 GVISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKV 300 V+SRD+S+DPVGACVGMRGSRVQAVV ELQGEKIDIIPWSPD A+F+VNAL PAEVAKV Sbjct: 241 AVVSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKV 300 Query: 301 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN 360 V+DED ERIEVVVP N+QLSLAIGRRGQNVRLASQLTGWDIDILTE EESERRQ +F Sbjct: 301 VLDEDAERIEVVVP--NDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAE 358 Query: 361 STRVFMEALNVDEVVGQLLASEGFTSVEELALVDVKELAGIEGFDEETANELQTRAREYL 420 + +FMEALNVDE+VGQ+LASEGF SVEELA VD E++ I+GFDE+TA E+Q RAREYL Sbjct: 359 RSNLFMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYL 418 Query: 421 EQLEAELEAKRKELGVEDAMKDVPGITGKMLVKLGENDVKTVEDLAGCATDDLVGWTERK 480 E++EAE +A+RKELGV D ++++PG+T MLV +GE+ VKT+ED AG A DDLVGW ERK Sbjct: 419 ERIEAEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERK 478 Query: 481 EGGEPTKHAGFLDGIEISRDEAEALIMQARLKAGWITEADLAKPAEE 527 + G+ H+G L ++SR +AE +++ ARLKAGWITE +LA +E+ Sbjct: 479 D-GDTINHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >AGc136 [K] COG0195 Transcription elongation factor Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 538 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/521 (72%), Positives = 446/521 (85%), Gaps = 3/521 (0%) Query: 1 MAVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGE 60 MAVSAN+LELLQIADAVAREK IDR IV+AAM DAI KAAR+RYGSET++ A+I++K GE Sbjct: 1 MAVSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGE 60 Query: 61 LRLTRHMLVVDVVENSSNQISLHDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIV 120 +RL R + VV+ E+ S QI L A+ NP A++GD IAD LPP+++GRIAAQSAKQVIV Sbjct: 61 IRLQRLLEVVEAAEDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIV 120 Query: 121 QKVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNG 180 QKVREAERDRQY EFKDRIG+IVNG VKRVEYG+VIVDLGRGE I+RRDEM+PRE R G Sbjct: 121 QKVREAERDRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYG 180 Query: 181 DRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI 240 DRVRAY++DVRRE RGPQIFLSRTHPQFM KLF EVPEIYDGI++IK+VARDPGSRAKI Sbjct: 181 DRVRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKI 240 Query: 241 GVISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKV 300 VIS DSS+DPVGACVGMRGSRVQAVV ELQGEKIDIIPWS + A+F+VNAL PAEVAKV Sbjct: 241 AVISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQEPASFIVNALQPAEVAKV 300 Query: 301 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN 360 V+DE+ ERIEVVVPD QLSLAIGRRGQNVRLASQLTGWDIDI+TEQEESERRQ +F Sbjct: 301 VLDEESERIEVVVPD--EQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNE 358 Query: 361 STRVFMEALNVDEVVGQLLASEGFTSVEELALVDVKELAGIEGFDEETANELQTRAREYL 420 T +FMEAL+VDE+VGQ+LASEGF VEELA VD+ E+ I+GFDE+TA+E+QTRAREYL Sbjct: 359 RTALFMEALDVDEMVGQVLASEGFAQVEELAYVDLDEITSIDGFDEDTADEIQTRAREYL 418 Query: 421 EQLEAELEAKRKELGVEDAMKDVPGITGKMLVKLGENDVKTVEDLAGCATDDLVGWTERK 480 E+LEAE++AKRKELGV D ++ + G+T +M+V LGE+ +KT+ED AGCA DDLVGW+ERK Sbjct: 419 ERLEAEMDAKRKELGVTDELRQIDGLTSQMMVALGEDGIKTIEDFAGCAADDLVGWSERK 478 Query: 481 EGGEPTKHAGFLDGIEISRDEAEALIMQARLKAGWITEADL 521 + GE K G +++SR EAE +++QARL AGWIT +L Sbjct: 479 D-GETKKFEGIFSKLDVSRVEAENMVVQARLLAGWITAEEL 518 >mlr5551 [K] COG0195 Transcription elongation factor Mlo Mesorhizobium loti Length = 531 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/516 (72%), Positives = 444/516 (86%), Gaps = 3/516 (0%) Query: 1 MAVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGE 60 M VSAN+LELLQIADAVAREKSID+SIVIAAM DAI KAAR+RYG ET++ A+I+ GE Sbjct: 1 MVVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGE 60 Query: 61 LRLTRHMLVVDVVENSSNQISLHDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIV 120 ++L R M VV+ V++ + QI++ A+ NP AQ+GD IA+ LPP+++GRIAAQSAKQVIV Sbjct: 61 MKLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIV 120 Query: 121 QKVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNG 180 QKVREAERDRQY E+KDRIG+IVNG VKRVEYG+VIVDLGRGEAI+RRDE++PRE ++ G Sbjct: 121 QKVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYG 180 Query: 181 DRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI 240 DRVRAY++DVRRE RGPQIFLSRTHPQFMAKLF EVPEIYDGI+EIK+VARDPGSRAKI Sbjct: 181 DRVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKI 240 Query: 241 GVISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKV 300 VISRDSS+DPVGACVGMRGSRVQAVV ELQGEKIDIIPWSP A+F+VNAL PAEVAKV Sbjct: 241 AVISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKV 300 Query: 301 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN 360 V+DED ERIEVVVPD +QLSLAIGRRGQNVRLASQLTGWDIDILTE EESERRQ +F Sbjct: 301 VLDEDAERIEVVVPD--DQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVE 358 Query: 361 STRVFMEALNVDEVVGQLLASEGFTSVEELALVDVKELAGIEGFDEETANELQTRAREYL 420 + +FMEAL+VDE+VGQ+LASEGFTSVEE+A VD E+A I+GFD++TA+E+QTRAREYL Sbjct: 359 RSALFMEALDVDEMVGQVLASEGFTSVEEVAYVDAGEIASIDGFDDDTASEIQTRAREYL 418 Query: 421 EQLEAELEAKRKELGVEDAMKDVPGITGKMLVKLGENDVKTVEDLAGCATDDLVGWTERK 480 E++EAE + KRK LGV+D ++++PGIT M+V LGE+ VKT+ED AG A DDL GW ERK Sbjct: 419 EKIEAEHDEKRKALGVKDELREIPGITTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERK 478 Query: 481 EGGEPTKHAGFLDGIEISRDEAEALIMQARLKAGWI 516 + GE + G L +SR +AE +++ ARLKAGWI Sbjct: 479 D-GETKVYPGVLANHGVSRADAEQMVLNARLKAGWI 513 >CC0044 [K] COG0195 Transcription elongation factor Ccr Caulobacter vibrioides Length = 548 Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/519 (63%), Positives = 407/519 (78%), Gaps = 6/519 (1%) Query: 1 MAVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGE 60 + ++AN+LELLQIADAVAREK I++ +VI A+EDA+ KAARARYG+E D+ +ID K GE Sbjct: 3 IGIAANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDPKTGE 62 Query: 61 LRLTRHMLVVD---VVENSSNQISLHDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQ 117 R + VV +E ++ A+R A++G + LPP E GR+ Q A+Q Sbjct: 63 TTQKRVIEVVSDDAELEGEIGKMPFSIAKRTWRDAEIGKVYEEVLPPFEIGRVQTQMARQ 122 Query: 118 VIVQKVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREVF 177 V++ KVREAER+RQY E+KDR+G+IVNG VKRVEYG+VIVDLGRGE I+RRD+ +PRE F Sbjct: 123 VVMHKVREAERERQYDEYKDRVGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENF 182 Query: 178 RNGDRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSR 237 GDR+RAYI+DVRRET+GPQI LSR H FMAKLFAQEVPE+YDG++EI+AVARDPGSR Sbjct: 183 NVGDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSR 242 Query: 238 AKIGVISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEV 297 AK+ VIS D S+DPVGACVGMRGSRVQAVV ELQGEKIDII WS D ATF+VNALAPAEV Sbjct: 243 AKMAVISNDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEV 302 Query: 298 AKVVIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQAD 357 +KVV+DE+ ER+EVVVPD QLSLAIGRRGQNVRLASQLTGW IDI+TE +ESERRQ + Sbjct: 303 SKVVMDEEDERVEVVVPD--EQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQRE 360 Query: 358 FENSTRVFMEALNVDEVVGQLLASEGFTSVEELALVDVKELAGIEGFDEETANELQTRAR 417 F T +F EAL+VDEV+ QLL +EGF +VE++A V+ E+A IEGFDEETA ELQTRAR Sbjct: 361 FAERTALFQEALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIASIEGFDEETAEELQTRAR 420 Query: 418 EYLEQLEAELEAKRKELGVEDAMKDVPGITGKMLVKLGENDVKTVEDLAGCATDDLVGWT 477 E+LE+ AEL+AKRK LGVED + + G+T M V LGE DVK++EDLAG DD+ GW Sbjct: 421 EFLEKEAAELDAKRKALGVEDELLTIEGVTLAMAVALGEGDVKSIEDLAGLVPDDMRGWF 480 Query: 478 ERKEGGEPTKHAGFLDGIEISRDEAEALIMQARLKAGWI 516 E K GGE + G L+ +S ++AEALIM+AR+ GW+ Sbjct: 481 ENK-GGERVREPGILESFNLSPEDAEALIMRARIAMGWV 518