BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0033.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM4367 [K] COG1959 Predicted transcriptional regulator Sty Salm...   116   2e-26
RSc3397 [K] COG1959 Predicted transcriptional regulator Rso Rals...   115   3e-26
RC0821 Non COG                                                        113   1e-25
YPO0379 [K] COG1959 Predicted transcriptional regulator Ype Yers...   109   2e-24
yjeB [K] COG1959 Predicted transcriptional regulator Eco Escheri...   109   2e-24

>STM4367 [K] COG1959 Predicted transcriptional regulator Sty Salmonella
           typhimurium LT2
          Length = 141

 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 87/138 (63%), Gaps = 5/138 (3%)

Query: 1   MRLTSFTDFALRALMRLAGEPD-RSFATSEIAAEFEISRNHLAKVVRDLAEAGFIATQRG 59
           M+LTSFTD+ LRAL+ +A  PD R  + SE+   + +SRNH+ K++  L+ AGF+   RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRG 60

Query: 60  AGGGFSLARPAETITLGEVVRALEGGSALVECFRDDGGDCLLLPRCRLKAKLAAAREAFM 119
             GG  L +PA TI +G+VVR LE  S LV C  +    C + P CRLK  L+ A ++F+
Sbjct: 61  KNGGIRLGKPANTICIGDVVRELEPLS-LVNCSSE---FCHITPACRLKQALSKAVQSFL 116

Query: 120 RELDGTTLAECAYLPRPV 137
           +ELD  TLA+     +P+
Sbjct: 117 KELDNYTLADLVEENQPL 134


>RSc3397 [K] COG1959 Predicted transcriptional regulator Rso Ralstonia
           solanacearum
          Length = 172

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 79/129 (61%)

Query: 1   MRLTSFTDFALRALMRLAGEPDRSFATSEIAAEFEISRNHLAKVVRDLAEAGFIATQRGA 60
           MRLT +TD++LR L+ +A  PD      +IA  F I +NHL K+V+ L + GF+ T RG 
Sbjct: 1   MRLTDYTDYSLRTLIYVAVHPDVLVTIQQIADAFGIPKNHLIKIVQGLGQNGFLHTVRGR 60

Query: 61  GGGFSLARPAETITLGEVVRALEGGSALVECFRDDGGDCLLLPRCRLKAKLAAAREAFMR 120
            GG +L RPA  I +G+VVRA E   +LVECF  +   C++   C L+  LAAA +A+  
Sbjct: 61  AGGITLGRPAVEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYFE 120

Query: 121 ELDGTTLAE 129
            LD  TL +
Sbjct: 121 VLDTYTLQD 129


>RC0821 Non COG
          Length = 142

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 78/129 (60%)

Query: 1   MRLTSFTDFALRALMRLAGEPDRSFATSEIAAEFEISRNHLAKVVRDLAEAGFIATQRGA 60
           M+LTSFTD+ LR+L+ LA +P+R  +  EI+    IS NHL KV+  LA+ G+I + +G 
Sbjct: 1   MQLTSFTDYGLRSLIYLASKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60

Query: 61  GGGFSLARPAETITLGEVVRALEGGSALVECFRDDGGDCLLLPRCRLKAKLAAAREAFMR 120
           GGG  LA    ++ LG+++  LE    +VECF  +   C +   C+ K  +  A EAF++
Sbjct: 61  GGGIKLAFNPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120

Query: 121 ELDGTTLAE 129
            L+  TL +
Sbjct: 121 TLNNYTLED 129


>YPO0379 [K] COG1959 Predicted transcriptional regulator Ype Yersinia pestis
          Length = 141

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 5/130 (3%)

Query: 1   MRLTSFTDFALRALMRLAGEPDRSFAT-SEIAAEFEISRNHLAKVVRDLAEAGFIATQRG 59
           M+LTSFTD+ LRAL+ +A  PD    + S++   + +SRNH+ K++  L+  G +   RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  AGGGFSLARPAETITLGEVVRALEGGSALVECFRDDGGDCLLLPRCRLKAKLAAAREAFM 119
             GG  L +PA+ I +G+VVR +E  + LV C  D    C + P CRLK  L  A ++F+
Sbjct: 61  KNGGIRLGKPADQILIGDVVRQMEPLT-LVNCSSD---FCHITPACRLKQVLNQAVQSFL 116

Query: 120 RELDGTTLAE 129
           +ELD  TLA+
Sbjct: 117 KELDNYTLAD 126


>yjeB [K] COG1959 Predicted transcriptional regulator Eco Escherichia
           coli K12
          Length = 141

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 85/138 (61%), Gaps = 5/138 (3%)

Query: 1   MRLTSFTDFALRALMRLAGEPD-RSFATSEIAAEFEISRNHLAKVVRDLAEAGFIATQRG 59
           M+LTSFTD+ LRAL+ +A  P+ R  + SE+   + +SRNH+ K++  L+ AG++   RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  AGGGFSLARPAETITLGEVVRALEGGSALVECFRDDGGDCLLLPRCRLKAKLAAAREAFM 119
             GG  L +PA  I +G+VVR LE  S LV C  +    C + P CRLK  L+ A ++F+
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELEPLS-LVNCSSE---FCHITPACRLKQALSKAVQSFL 116

Query: 120 RELDGTTLAECAYLPRPV 137
            ELD  TLA+     +P+
Sbjct: 117 TELDNYTLADLVEENQPL 134