BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0008.p         (137 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC1077 [NU] COG1377 Flagellar biosynthesis pathway, component Fl...   176   1e-44
STM1914 [NU] COG1377 Flagellar biosynthesis pathway, component F...   157   9e-39
BS_flhB [NU] COG1377 Flagellar biosynthesis pathway, component F...   154   4e-38
mll2899 [NU] COG1377 Flagellar biosynthesis pathway, component F...   152   3e-37
BH2439 [NU] COG1377 Flagellar biosynthesis pathway, component Fl...   150   8e-37

>CC1077 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Ccr
           Caulobacter vibrioides
          Length = 361

 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 2   SLQEMKEEFKQSEGDPHVKGRIKQLRVQRAKKRMMAQVPKASVIITNPTHYSVALAYDRS 61
           +LQE+KEEFKQS+GDPH+KG+ +Q+++QR+++RMM  VPKA+V++ NPTHY+VAL Y++ 
Sbjct: 224 TLQEVKEEFKQSDGDPHIKGKRRQIQMQRSRQRMMQAVPKATVVVMNPTHYAVALKYEQG 283

Query: 62  MS-APICVAKGVDIIAFKIREVAKEHDIPIVENVPLARALYATVEIDREIPVEHYHAVAE 120
            + AP+CVAKGVD +A KIR VA+EH +P++E+ PLARALYA+VEID EIPVEH+ AVA+
Sbjct: 284 ETPAPLCVAKGVDDLALKIRAVAEEHGVPVLEDPPLARALYASVEIDEEIPVEHFEAVAK 343

Query: 121 IIGYVMRLRR 130
           +I +++  ++
Sbjct: 344 VISFILNGKK 353


>STM1914 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Sty
           Salmonella typhimurium LT2
          Length = 383

 Score =  157 bits (396), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 101/131 (77%), Gaps = 1/131 (0%)

Query: 1   MSLQEMKEEFKQSEGDPHVKGRIKQLRVQRAKKRMMAQVPKASVIITNPTHYSVALAYDR 60
           MS Q++++EFK+SEGDPHVKG+I+Q++   A++RMM  VPKA VI+TNPTHYSVAL YD 
Sbjct: 222 MSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDE 281

Query: 61  S-MSAPICVAKGVDIIAFKIREVAKEHDIPIVENVPLARALYATVEIDREIPVEHYHAVA 119
           + MSAP  VAKG  +IA +IRE+  EH +P +E  PLARALY   EI ++IP + Y AVA
Sbjct: 282 NKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVA 341

Query: 120 EIIGYVMRLRR 130
           E++ +V +L+R
Sbjct: 342 EVLAWVWQLKR 352


>BS_flhB [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Bsu
           Bacillus subtilis
          Length = 360

 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 101/131 (77%), Gaps = 1/131 (0%)

Query: 1   MSLQEMKEEFKQSEGDPHVKGRIKQLRVQRAKKRMMAQVPKASVIITNPTHYSVALAYDR 60
           MS Q++K+E+K+SEGDP +K +IKQ + + A +RMM +VPKA VIITNPTHY++AL YD 
Sbjct: 227 MSKQDIKDEYKKSEGDPIIKSKIKQRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDE 286

Query: 61  S-MSAPICVAKGVDIIAFKIREVAKEHDIPIVENVPLARALYATVEIDREIPVEHYHAVA 119
             M AP  VAKGVD +A KIR++AKEHD+ +VEN PLARALY  VEID+ +P E +  +A
Sbjct: 287 EKMDAPYIVAKGVDHLALKIRKIAKEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLA 346

Query: 120 EIIGYVMRLRR 130
           EI+ YV + ++
Sbjct: 347 EILAYVYKTKQ 357


>mll2899 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Mlo
           Mesorhizobium loti
          Length = 360

 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/123 (58%), Positives = 95/123 (77%), Gaps = 1/123 (0%)

Query: 1   MSLQEMKEEFKQSEGDPHVKGRIKQLRVQRAKKRMMAQVPKASVIITNPTHYSVALAYDR 60
           M+ QE+K+EFKQSEGDP VK R++ L   RA+KRMM  VP+A++II NPTH+S+AL Y R
Sbjct: 224 MTKQEVKDEFKQSEGDPIVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVR 283

Query: 61  SM-SAPICVAKGVDIIAFKIREVAKEHDIPIVENVPLARALYATVEIDREIPVEHYHAVA 119
              SAP+ VAKG D++A KIRE+AKEH+IPI E+V LAR++Y  V +D  IP + Y AVA
Sbjct: 284 DEDSAPLVVAKGQDLVALKIREIAKEHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVA 343

Query: 120 EII 122
           E++
Sbjct: 344 ELV 346


>BH2439 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Bha
           Bacillus halodurans
          Length = 363

 Score =  150 bits (379), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 100/131 (76%), Gaps = 1/131 (0%)

Query: 1   MSLQEMKEEFKQSEGDPHVKGRIKQLRVQRAKKRMMAQVPKASVIITNPTHYSVALAYDR 60
           MS Q++K+E K  EGDP VK + KQ +++ A +RMM +VPKA V+ITNPTHY++AL YD+
Sbjct: 230 MSKQDVKDEHKNVEGDPKVKSKRKQKQMEMAMQRMMQEVPKADVVITNPTHYAIALKYDQ 289

Query: 61  S-MSAPICVAKGVDIIAFKIREVAKEHDIPIVENVPLARALYATVEIDREIPVEHYHAVA 119
           S M AP+ VAKGVD +AFKI+ +AK+H++  VEN PLARALY   +I  ++P + + AVA
Sbjct: 290 SKMDAPVIVAKGVDYVAFKIKSLAKQHNVVTVENKPLARALYDQADIGDQVPEQLFKAVA 349

Query: 120 EIIGYVMRLRR 130
           E++ YV RL++
Sbjct: 350 EVLAYVYRLKK 360