BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0046.0006.p (256 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC1076 [NU] COG1684 Flagellar biosynthesis pathway, component Fl... 180 3e-45 SMc03055 [NU] COG1684 Flagellar biosynthesis pathway, component ... 122 6e-28 AGc1028 [NU] COG1684 Flagellar biosynthesis pathway, component F... 118 2e-26 BS_fliR [NU] COG1684 Flagellar biosynthesis pathway, component F... 112 9e-25 BH2440 [NU] COG1684 Flagellar biosynthesis pathway, component Fl... 106 5e-23 >CC1076 [NU] COG1684 Flagellar biosynthesis pathway, component FliR Ccr Caulobacter vibrioides Length = 251 Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 91/208 (43%), Positives = 140/208 (67%) Query: 17 LVFARVGAMVMLLPGFGESNIPARVKLSIALLLTLIILPLHRNAYHVDLTSISSLGVLMV 76 LVFARVGAMVM +PG G+ IPAR++LS ALL+ LI+ PL +N +++ LG ++ Sbjct: 15 LVFARVGAMVMTMPGIGDQAIPARIRLSFALLMALILAPLVQNTVGPIPSTLGGLGGAVI 74 Query: 77 HELIIGIVLGATARVTLSALNVAGSVIAQQLGLGFVTAVDPTQGQQGQIIGNFLTILGLT 136 HE++IG+++G+ R+ +++L AG +I+ Q L F + +P+ + FL++LGLT Sbjct: 75 HEVLIGLMIGSVLRLFMTSLTTAGEIISMQTTLSFAQSTNPSMEGSSTAVATFLSMLGLT 134 Query: 137 LLFATDSHYLVIAALSESYRIFSPGEIMPTGDVAALATSAFSAAFKIGLQLSAPFLVFGL 196 L+ ATD H+L IAA+ +SY IF +P D AALA + +F +G+QL+AP +VF L Sbjct: 135 LVMATDLHHLFIAAIVKSYTIFPFTRAVPVNDAAALAVQTVAQSFSLGVQLAAPVIVFSL 194 Query: 197 VFNIGLGVLARLMPQMQVYFVGVPLSIM 224 VFN+ G++ R+MP Q++FV PLS++ Sbjct: 195 VFNLATGLVGRIMPAFQIFFVASPLSVI 222 >SMc03055 [NU] COG1684 Flagellar biosynthesis pathway, component FliR Sme Sinorhizobium meliloti Length = 250 Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 131/234 (55%), Gaps = 3/234 (1%) Query: 19 FARVGAMVMLLPGFGESNIPARVKLSIALLLTLIILPLHRNAYHVDLTSISSLGVLMV-H 77 F R+G VM++PGF + +P +++L IA+ L++ ILP+ + +T + +V Sbjct: 16 FCRIGGCVMIMPGFSTARVPMQIRLFIAVALSMAILPIMWTDIYPQVTGKGHDYLYLVAT 75 Query: 78 ELIIGIVLGATARVTLSALNVAGSVIAQQLGLGFVTAVDPTQGQQGQIIGNFLTILGLTL 137 E IG V+G AR + L AG+ I +G G A D + + + + GL + Sbjct: 76 ETAIGAVIGLVARYYVLGLQFAGTAITMLMGFGSPPAADVLEDTAENQLTSMIGFAGLMI 135 Query: 138 LFATDSHYLVIAALSESYRIFSPGE-IMPTGDVAALATSAFSAAFKIGLQLSAPFLVFGL 196 LF D H+++ A+++SYR+ G P G + L T++ F I L+L++PF+++GL Sbjct: 136 LFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGTLITL-TNSLGQTFMIMLRLASPFVIYGL 194 Query: 197 VFNIGLGVLARLMPQMQVYFVGVPLSIMVGFLIFGVVLAAMMNTYLDYFLGVMR 250 +FN+ +G++ +L PQ+ VYF+ P IM G + + +AAM+ + D F VM+ Sbjct: 195 LFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFADGFAPVMQ 248 >AGc1028 [NU] COG1684 Flagellar biosynthesis pathway, component FliR Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 251 Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 126/231 (54%), Gaps = 2/231 (0%) Query: 17 LVFARVGAMVMLLPGFGESNIPARVKLSIALLLTLIILPLHRNAYHVDLTSISSLGV--L 74 L R+GA M +PGF S I ++++ + + +++ +LP+ + + ++ S V L Sbjct: 14 LAICRIGACFMTMPGFSSSRISPQIRMLLCVAVSMALLPVLWDTIYPKVSGASQGAVVGL 73 Query: 75 MVHELIIGIVLGATARVTLSALNVAGSVIAQQLGLGFVTAVDPTQGQQGQIIGNFLTILG 134 + E++IG + G AR G++I +GL DP + Q I NF+T G Sbjct: 74 IFSEVLIGAMYGLIARFYTLGFQFTGALIGASIGLSAPGGADPIEDVQENQIANFITFGG 133 Query: 135 LTLLFATDSHYLVIAALSESYRIFSPGEIMPTGDVAALATSAFSAAFKIGLQLSAPFLVF 194 L +LF D H++V+ AL +SY G ++ + T A+F I L+L++PF+++ Sbjct: 134 LLVLFMMDFHHIVLKALVDSYSATPVGALISGQKMLITLTDTLRASFSIMLRLASPFVIY 193 Query: 195 GLVFNIGLGVLARLMPQMQVYFVGVPLSIMVGFLIFGVVLAAMMNTYLDYF 245 GL+FN+ +G++ +L PQ+ V+F+ P + G + + +AA++ ++D F Sbjct: 194 GLMFNVAVGLINKLAPQIPVFFISTPFVLAGGLFMLYLSVAALIRQFVDGF 244 >BS_fliR [NU] COG1684 Flagellar biosynthesis pathway, component FliR Bsu Bacillus subtilis Length = 259 Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 123/234 (52%), Gaps = 9/234 (3%) Query: 5 VSLLPALAAIFVLVFARVGAMVMLLPGFGESNIPARVKLSIALLLTLIILPLHRNAYHVD 64 + L PA F+LVF R+ A + +P FG N+PA ++ A L +I ++ Sbjct: 5 IDLFPA----FLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLE 60 Query: 65 LTSISSLGVLMVHELIIGIVLGATARVTLSALNVAGSVIAQQLGLGFVTAVDPTQGQQGQ 124 + L L E ++G+ LG A + ++A+ +AGS I Q+G +DP G Q Sbjct: 61 IDEHYML--LAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSP 118 Query: 125 IIGNFLTILGLTLLFATDSHYLVIAALSESYRIFSPGEIMPT-GD--VAALATSAFSAAF 181 +IG F+ + L + + ++H+L++ + S++ S + P GD A + +A F Sbjct: 119 LIGQFIYTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEQFAYFIAKSLNAMF 178 Query: 182 KIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIMVGFLIFGVVLA 235 I Q+SAP + + ++ LG++AR +PQ+ V+ VG+PL I V F++ V ++ Sbjct: 179 IIAFQMSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMS 232 >BH2440 [NU] COG1684 Flagellar biosynthesis pathway, component FliR Bha Bacillus halodurans Length = 258 Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 12/226 (5%) Query: 5 VSLLPALAAIFVLVFARVGAMVMLLPGFGESNIPARVKLSIALLLTLII-LPLHRNAYHV 63 + LLP +F+LVF R+ A +M +P F NIPA K+ IAL L I+ L Sbjct: 5 IQLLP----MFLLVFVRMLAFLMTMPLFSYRNIPAMFKVGIALFLAWILTFSLEPEIILF 60 Query: 64 DLTSISSLGVLMVHELIIGIVLGATARVTLSALNVAGSVIAQQLGLGFVTAVDPTQGQQG 123 D T + +L++ E+++G+++G A V L A+ AG+ I ++G VDP G Q Sbjct: 61 DGTYV----ILIMKEVLVGLMVGLIAMVLLYAIQAAGAFIDVKIGFLIANIVDPQTGAQS 116 Query: 124 QIIGNFLTILGLTLLFATDSHYLVIAALSESYRIF---SPGEIMPTGDVAALATSAFSAA 180 +IG++L L + AT+ H+L+I + SY+ P + ++ L + + Sbjct: 117 PLIGSYLYTFALLFMLATNGHHLLIDGMYYSYQFIPLNQPFLNVSDENMIELIATTLNTM 176 Query: 181 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIMVG 226 F I Q++ P + + ++ LG+++R +PQM V+ VG+PL I+VG Sbjct: 177 FIIAFQMAFPLVGSLFLVDVALGMVSRAVPQMNVFVVGMPLKILVG 222