BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0005.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC1075 [NU] COG1987 Flagellar biosynthesis pathway, component Fl...    84   8e-17
BMEII0165 [NU] COG1987 Flagellar biosynthesis pathway, component...    79   3e-15
SMc03053 [NU] COG1987 Flagellar biosynthesis pathway, component ...    75   4e-14
msr2943 [NU] COG1987 Flagellar biosynthesis pathway, component F...    73   2e-13
AGc1023 [NU] COG1987 Flagellar biosynthesis pathway, component F...    69   4e-12

>CC1075 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Ccr
          Caulobacter vibrioides
          Length = 87

 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 67/86 (77%)

Query: 1  MTGPETLDVARDAIWTIVVVSSPLMVVGLVVGVVVSLFQALTQIQEQTLIFVPKILAIFV 60
          MTG E LDV RDAIW  + + +P+++VGLVVGV++ LFQALTQIQE TL++ PKI+AIF+
Sbjct: 1  MTGAEVLDVGRDAIWLTLQLCAPVLIVGLVVGVIIGLFQALTQIQEATLVYAPKIVAIFI 60

Query: 61 TLLLALPFMADSLSSHMMRISSRIIG 86
          +LL+ LP M   +S  M +I++RI G
Sbjct: 61 SLLIFLPLMGSLMSGFMRQIAARIAG 86


>BMEII0165 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Bme
          Brucella melitensis
          Length = 88

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 55/87 (63%)

Query: 1  MTGPETLDVARDAIWTIVVVSSPLMVVGLVVGVVVSLFQALTQIQEQTLIFVPKILAIFV 60
          M   + LD+   AIWT++  S P ++  ++ G+ ++LFQALTQIQE TL FVPKI+ IFV
Sbjct: 1  MNEADALDIVNSAIWTVLTASGPAVLAAMLAGIGIALFQALTQIQEMTLTFVPKIIVIFV 60

Query: 61 TLLLALPFMADSLSSHMMRISSRIIGG 87
           L L  PF+   +++  +   SRI  G
Sbjct: 61 VLALTAPFVGAQINAFTLLAYSRIEKG 87


>SMc03053 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Sme
          Sinorhizobium meliloti
          Length = 88

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 56/87 (64%)

Query: 1  MTGPETLDVARDAIWTIVVVSSPLMVVGLVVGVVVSLFQALTQIQEQTLIFVPKILAIFV 60
          M   + LD+ + AIWT++V S P ++  +VVGV ++  QALTQ+QE TL FVPKILA+ +
Sbjct: 1  MNEADALDIVQAAIWTVIVASGPAVLAAMVVGVGIAFIQALTQVQEMTLTFVPKILAVMI 60

Query: 61 TLLLALPFMADSLSSHMMRISSRIIGG 87
          T  ++ PF+   +S     + SRI  G
Sbjct: 61 TAAISAPFVGAQISIFTDIVFSRIQSG 87


>msr2943 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Mlo
          Mesorhizobium loti
          Length = 88

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 57/87 (65%)

Query: 1  MTGPETLDVARDAIWTIVVVSSPLMVVGLVVGVVVSLFQALTQIQEQTLIFVPKILAIFV 60
          M   + LD+ + A+WT++  S+P+++V + VG+ ++L QALTQIQE TL FVPKI+AI +
Sbjct: 1  MNEADALDIVQYAVWTVLTASAPVVLVAMAVGIGIALIQALTQIQEITLTFVPKIVAIML 60

Query: 61 TLLLALPFMADSLSSHMMRISSRIIGG 87
           + L  PF+   +S+    I  RI  G
Sbjct: 61 VVALTGPFIGGQISAFTNVIFQRIQNG 87


>AGc1023 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 88

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 54/87 (62%)

Query: 1  MTGPETLDVARDAIWTIVVVSSPLMVVGLVVGVVVSLFQALTQIQEQTLIFVPKILAIFV 60
          M   + LD+ + A+WT++V + P ++  ++VGV ++  QALTQ+QE TL FVPKI+ I +
Sbjct: 1  MNEADALDIMQAAVWTVLVAAGPAVLAAMIVGVAIAFIQALTQVQEMTLTFVPKIVTIMI 60

Query: 61 TLLLALPFMADSLSSHMMRISSRIIGG 87
           L +A PF+   +      + SRI  G
Sbjct: 61 VLGVAAPFVGAQIVLFSNLVFSRIQSG 87