BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0002.p         (136 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC0953 [N] COG1815 Flagellar basal body protein Ccr Caulobacter ...    80   1e-15

>CC0953 [N] COG1815 Flagellar basal body protein Ccr Caulobacter vibrioides
          Length = 137

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 77/134 (57%), Gaps = 11/134 (8%)

Query: 12  LRTKMQWHQERQRVLAENISNSDTPSFRPRDLVEPKF------DRAGATVGGG----VGT 61
           L++++ +  ERQ+++A+N++NSDTP +RP DL    F      + AG    GG       
Sbjct: 2   LKSRLGYLTERQKLVAQNVANSDTPGYRPSDLKPFSFQASLMNNAAGPVYRGGRAAPTSG 61

Query: 62  LPMMQTSATHMAASGAPDSFDNDRGKSGFQTRPAGNAVNLEEQMLKVSANQMDYAAVTSL 121
           + M+ T+ +HM    AP ++    G    +T   GNAV+LE+QMLK++  +M+Y A  S 
Sbjct: 62  VTMIATTTSHMGRPNAPSAWRATAGADS-ETTLDGNAVSLEDQMLKMTDARMNYDAAISF 120

Query: 122 YSRSLHLLKTAIGK 135
           Y +S+ +L+ A  K
Sbjct: 121 YQKSMTMLRMAARK 134