BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0031.p         (71 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

aq_108a [C] COG3411 Ferredoxin Aae Aquifex aeolicus                    71   5e-13
RSp0627 Non COG                                                        60   1e-09
RSc0329 Non COG                                                        59   2e-09

>aq_108a [C] COG3411 Ferredoxin Aae Aquifex aeolicus
          Length = 65

 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 39/52 (75%)

Query: 15 FTVTGCLGFCNSGPLMVVYPDGIWYRATTPEDVDEIVDSHLKQGKRVDRLVM 66
           T TGC+  C  GP++VVYPDG+WY    PEDVDEIV+ HLK G+ V+RLV+
Sbjct: 5  ITPTGCMNACMMGPVVVVYPDGVWYGQVKPEDVDEIVEKHLKGGEPVERLVI 56


>RSp0627 Non COG
          Length = 109

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 35/62 (56%)

Query: 1  MGKAIEAQDLTDVGFTVTGCLGFCNSGPLMVVYPDGIWYRATTPEDVDEIVDSHLKQGKR 60
          +G+ I+A +   V  T T C   C  GPLMVVYPDG+WYR      V  IVD HL  G  
Sbjct: 30 LGQTIDACEGLRVKRTRTHCFAVCKQGPLMVVYPDGVWYRNLDAASVRRIVDEHLAGGAP 89

Query: 61 VD 62
          V+
Sbjct: 90 VE 91


>RSc0329 Non COG
          Length = 108

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 13  VGFTVTGCLGFCNSGPLMVVYPDGIWYRATTPEDVDEIVDSHLKQGKRVDRLVM 66
           V     GCL  C  GP++VVYP+ +WY     ED+DEI+ SHL +GK V RL++
Sbjct: 50  VRINKAGCLDRCELGPVLVVYPEAVWYTFVDREDIDEIIQSHLIEGKPVARLMV 103