BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0022.p         (79 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI1481 [J] COG0238 Ribosomal protein S18 Bme Brucella melitensis    132   2e-31
msl7844 [J] COG0238 Ribosomal protein S18 Mlo Mesorhizobium loti      131   3e-31
SMc00567 [J] COG0238 Ribosomal protein S18 Sme Sinorhizobium mel...   130   7e-31
CC1668 [J] COG0238 Ribosomal protein S18 Ccr Caulobacter vibrioides   127   4e-30
RC0065 [J] COG0238 Ribosomal protein S18 Rco Rickettsia conorii        95   3e-20

>BMEI1481 [J] COG0238 Ribosomal protein S18 Bme Brucella melitensis
          Length = 82

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 69/74 (93%)

Query: 6  ARRPFFRRRKSCPFTGANAPKIDYKDSKLLMRYVSERGKIVPSRITAVSAKKQRELARAI 65
           RRPF RRRK+CPF+GANAPKIDYKD KLL RY+SERGKIVPSRITAVS KKQRELA+AI
Sbjct: 9  TRRPFHRRRKTCPFSGANAPKIDYKDVKLLQRYISERGKIVPSRITAVSQKKQRELAKAI 68

Query: 66 KRARFLGLLPYVIR 79
          KRARFLGLLPYV++
Sbjct: 69 KRARFLGLLPYVVK 82


>msl7844 [J] COG0238 Ribosomal protein S18 Mlo Mesorhizobium loti
          Length = 82

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 69/74 (93%)

Query: 6  ARRPFFRRRKSCPFTGANAPKIDYKDSKLLMRYVSERGKIVPSRITAVSAKKQRELARAI 65
           RRPF RRRK+CPF+GANAPKIDYKD +LL RY+SERGKIVPSRITAVS KKQRELA+AI
Sbjct: 9  TRRPFHRRRKTCPFSGANAPKIDYKDVRLLQRYISERGKIVPSRITAVSQKKQRELAKAI 68

Query: 66 KRARFLGLLPYVIR 79
          KRARFLGLLPYV+R
Sbjct: 69 KRARFLGLLPYVVR 82


>SMc00567 [J] COG0238 Ribosomal protein S18 Sme Sinorhizobium meliloti
          Length = 82

 Score =  130 bits (327), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 71/78 (91%)

Query: 1  MADAGARRPFFRRRKSCPFTGANAPKIDYKDSKLLMRYVSERGKIVPSRITAVSAKKQRE 60
          ++ A  RRPF RRRK+CPF+GANAP+IDYKD +LL RY+SERGKIVPSRITAVS KKQRE
Sbjct: 4  VSSAPVRRPFHRRRKTCPFSGANAPRIDYKDVRLLQRYISERGKIVPSRITAVSQKKQRE 63

Query: 61 LARAIKRARFLGLLPYVI 78
          LA+AIKRARFLGLLPY++
Sbjct: 64 LAQAIKRARFLGLLPYIV 81


>CC1668 [J] COG0238 Ribosomal protein S18 Ccr Caulobacter vibrioides
          Length = 92

 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/70 (88%), Positives = 66/70 (94%)

Query: 10 FFRRRKSCPFTGANAPKIDYKDSKLLMRYVSERGKIVPSRITAVSAKKQRELARAIKRAR 69
          FFRRRK CPF+GANAPKIDYKD KLL RYVSERGKIVPSRITAVSAKKQRELA+AIKRAR
Sbjct: 23 FFRRRKVCPFSGANAPKIDYKDVKLLQRYVSERGKIVPSRITAVSAKKQRELAKAIKRAR 82

Query: 70 FLGLLPYVIR 79
          FL LLPYV++
Sbjct: 83 FLALLPYVVK 92


>RC0065 [J] COG0238 Ribosomal protein S18 Rco Rickettsia conorii
          Length = 95

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 1  MADAGARRPFFRRRKSCPFTGANAPKIDYKDSKLLMRYVSERGKIVPSRITAVSAKKQRE 60
          + D  A++ FFRRRK CP +  NAP IDYK+ +LL+++VSE G+++PSRIT V AKKQR+
Sbjct: 15 VGDKTAKKVFFRRRKGCPLSVPNAPVIDYKNPELLIKFVSEGGRMLPSRITNVCAKKQRK 74

Query: 61 LARAIKRARFLGLLPYVIR 79
          L  AIK AR L LLP+V +
Sbjct: 75 LNNAIKIARILALLPFVFQ 93