BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0057.p         (154 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0645 [K] COG1522 Transcriptional regulators Rso Ralstonia sol...   162   3e-40
VC1904 [K] COG1522 Transcriptional regulators Vch Vibrio cholerae     142   4e-34
lrp [K] COG1522 Transcriptional regulators Eco Escherichia coli K12   139   3e-33
Zlrp [K] COG1522 Transcriptional regulators EcZ Escherichia coli...   139   3e-33
ECs0974 [K] COG1522 Transcriptional regulators Ecs Escherichia c...   139   3e-33

>RSp0645 [K] COG1522 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 186

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 104/148 (70%)

Query: 5   LDRIDLKMLRLLQKNGRLSNAELAEQVGVSPATCHRRTQALFDEGYLSGVRAMVAPRKLG 64
           LDR D  +L+ LQ++  +SN  LA++V +SP  C RR + L + G + GV A++ P+ L 
Sbjct: 36  LDRTDRAILKWLQRDASISNVALADKVSLSPPACLRRVERLKELGCIRGVVALLEPKALD 95

Query: 65  KGTLVMVGVVLDRSTPESFASFEQAVAKLKCVLDCHLVAGDFDYFLKIRAGDVDDFKRIH 124
            GTLVM+GVVLDRSTPESFA FE+AV K+   L+CH+V G+FDYF+ +R  D D + R+H
Sbjct: 96  LGTLVMIGVVLDRSTPESFADFEKAVQKVPGCLECHVVTGEFDYFMLVRTRDNDSYNRLH 155

Query: 125 GDQLIALPGVRQTRTFFVMKEVVDNAAL 152
            +QL+ LPGVRQ RTF  +K+V+    L
Sbjct: 156 AEQLLYLPGVRQIRTFMTLKQVLSTTQL 183


>VC1904 [K] COG1522 Transcriptional regulators Vch Vibrio cholerae
          Length = 164

 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 95/142 (66%)

Query: 5   LDRIDLKMLRLLQKNGRLSNAELAEQVGVSPATCHRRTQALFDEGYLSGVRAMVAPRKLG 64
           LDRID  +L  LQK+GR+SN EL+++VG+SP  C  R + L  +G+++G  A++ P+ L 
Sbjct: 12  LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFITGYTALLNPQYLD 71

Query: 65  KGTLVMVGVVLDRSTPESFASFEQAVAKLKCVLDCHLVAGDFDYFLKIRAGDVDDFKRIH 124
              LV V + L+R  P+ F  F  AV KL  + +CHLV+GDFDY LK R  D+  ++R+ 
Sbjct: 72  ASLLVFVEITLNRGAPDVFEQFNAAVQKLDDIQECHLVSGDFDYLLKTRVSDMGAYRRLL 131

Query: 125 GDQLIALPGVRQTRTFFVMKEV 146
           GD L+ LPGV  TRT+ VM+EV
Sbjct: 132 GDTLLRLPGVNDTRTYVVMEEV 153


>lrp [K] COG1522 Transcriptional regulators Eco Escherichia coli K12
          Length = 164

 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 94/142 (66%)

Query: 5   LDRIDLKMLRLLQKNGRLSNAELAEQVGVSPATCHRRTQALFDEGYLSGVRAMVAPRKLG 64
           LDRID  +L  LQK+GR+SN EL+++VG+SP  C  R + L  +G++ G  A++ P  L 
Sbjct: 12  LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71

Query: 65  KGTLVMVGVVLDRSTPESFASFEQAVAKLKCVLDCHLVAGDFDYFLKIRAGDVDDFKRIH 124
              LV V + L+R  P+ F  F  AV KL+ + +CHLV+GDFDY LK R  D+  ++++ 
Sbjct: 72  ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131

Query: 125 GDQLIALPGVRQTRTFFVMKEV 146
           G+ L+ LPGV  TRT+ VM+EV
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEV 153


>Zlrp [K] COG1522 Transcriptional regulators EcZ Escherichia coli O157:H7
           EDL933
          Length = 164

 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 94/142 (66%)

Query: 5   LDRIDLKMLRLLQKNGRLSNAELAEQVGVSPATCHRRTQALFDEGYLSGVRAMVAPRKLG 64
           LDRID  +L  LQK+GR+SN EL+++VG+SP  C  R + L  +G++ G  A++ P  L 
Sbjct: 12  LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71

Query: 65  KGTLVMVGVVLDRSTPESFASFEQAVAKLKCVLDCHLVAGDFDYFLKIRAGDVDDFKRIH 124
              LV V + L+R  P+ F  F  AV KL+ + +CHLV+GDFDY LK R  D+  ++++ 
Sbjct: 72  ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131

Query: 125 GDQLIALPGVRQTRTFFVMKEV 146
           G+ L+ LPGV  TRT+ VM+EV
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEV 153


>ECs0974 [K] COG1522 Transcriptional regulators Ecs Escherichia coli O157:H7
          Length = 164

 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 94/142 (66%)

Query: 5   LDRIDLKMLRLLQKNGRLSNAELAEQVGVSPATCHRRTQALFDEGYLSGVRAMVAPRKLG 64
           LDRID  +L  LQK+GR+SN EL+++VG+SP  C  R + L  +G++ G  A++ P  L 
Sbjct: 12  LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71

Query: 65  KGTLVMVGVVLDRSTPESFASFEQAVAKLKCVLDCHLVAGDFDYFLKIRAGDVDDFKRIH 124
              LV V + L+R  P+ F  F  AV KL+ + +CHLV+GDFDY LK R  D+  ++++ 
Sbjct: 72  ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131

Query: 125 GDQLIALPGVRQTRTFFVMKEV 146
           G+ L+ LPGV  TRT+ VM+EV
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEV 153