BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0022.p (467 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1933 Non COG 495 e-139 SMb20990 [O] COG1030 Membrane-bound serine protease (ClpP class)... 377 e-104 RSc0803 [O] COG1030 Membrane-bound serine protease (ClpP class) ... 343 6e-94 PA0451 [O] COG1030 Membrane-bound serine protease (ClpP class) P... 333 7e-91 aq_1820 [O] COG1030 Membrane-bound serine protease (ClpP class) ... 244 3e-64 >mll1933 Non COG Length = 473 Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust. Identities = 268/445 (60%), Positives = 332/445 (74%), Gaps = 16/445 (3%) Query: 26 PGTAADDSRLALTISIDGAIGPAAASYVKDGLAKAAERHAEVVILRLNTPGGLSTSMREI 85 P ++A ++AL+++IDGAIGPA+ +++ L AA+R A V+IL+L+TPGGL TSMRE+ Sbjct: 21 PLSSAGSEKVALSVAIDGAIGPASTRQLEEALDVAAKRDATVLILQLDTPGGLVTSMREM 80 Query: 86 ITDVLASPVPVIGYVAPSGAHAASAGTYILYATHLAAMAPGTNIGAATPVQIGGPLPGLP 145 I D+LASPVPVIGYVAP+G HAASAGTYILYATH+AAMAPGTN+GAATPV+IGG LP LP Sbjct: 81 IADILASPVPVIGYVAPAGGHAASAGTYILYATHVAAMAPGTNLGAATPVEIGG-LPSLP 139 Query: 146 GGTP---------DKDGKEKDGGAPSGTK-----DAMTAKVTNDAVAFIRSLAELRGRNA 191 GG G +K+ G G DAM AKVTNDAVA IRSLAELRGRN Sbjct: 140 GGDKGDQKTQGEQKTQGDQKNQGDQKGEDGRPAGDAMMAKVTNDAVALIRSLAELRGRNG 199 Query: 192 DWAEKAVRDAATLSTNAALQVHVIEFTAHDPADLLRQVDGRMVELAGGKTQRLATRDAAI 251 DW EKAVR+AA+LS NAALQ HVI+F AHD +LL+ DGR V++AG K LAT+ + Sbjct: 200 DWGEKAVREAASLSANAALQEHVIDFVAHDTTELLQLADGRTVDVAGKKVV-LATKGLPV 258 Query: 252 EAIDPTWLSRVLAVITDPNIAFVLLMVGIYGLIFEFMSPGAVAPGVVGTICLLLGLYALN 311 E ++P W R+LAVITDPNIA +L++VG+YG++FEF SPGAVAPGV+GTICL+LGLYAL+ Sbjct: 259 ETLEPGWFIRLLAVITDPNIAVILMLVGVYGIVFEFTSPGAVAPGVIGTICLVLGLYALD 318 Query: 312 MLPINYAGFALMLVGIALLAIEAFNPTVVIGLGGIVAFVLGAAMLFRIEAPGYALSWSVI 371 +LPINY G ALML+GIA L IEA NPTVV+G+ G+ AF+ GAAML R+E PG+A+SW+VI Sbjct: 319 LLPINYTGLALMLLGIAFLVIEALNPTVVLGVSGVAAFLFGAAMLLRVEGPGFAMSWAVI 378 Query: 372 AIVAAMFAGLILVVLGALRRARNGPLRTGAQAMRGLSAEVLDWSETSGHVFTNGERWQAR 431 AA+ GL L+ + AR P R G AMRGL E+LDW GHV GERW+A+ Sbjct: 379 GPAAALTLGLALLTGTYVWAARKNPPRVGGDAMRGLPVEILDWQGGEGHVLALGERWRAK 438 Query: 432 GTETFKAGETVEVANINDLTLVVRR 456 E AG++VEV +I+DL L VRR Sbjct: 439 AAEPIVAGDSVEVTDISDLVLTVRR 463 >SMb20990 [O] COG1030 Membrane-bound serine protease (ClpP class) Sme Sinorhizobium meliloti Length = 478 Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust. Identities = 229/440 (52%), Positives = 299/440 (67%), Gaps = 16/440 (3%) Query: 33 SRLALTISIDGAIGPAAASYVKDGLAKAAERHAEVVILRLNTPGGLSTSMREIITDVLAS 92 R AL + ++GAI PAAA YV GL +A +R A +V+L+++TPGGL TSMR+II +L S Sbjct: 44 ERTALVLHVNGAISPAAAEYVTRGLQQARDRGAALVVLQMDTPGGLDTSMRDIIRAILDS 103 Query: 93 PVPVIGYVAPSGAHAASAGTYILYATHLAAMAPGTNIGAATPVQIGGPLPGLPGGTPDKD 152 PVPV +V+PSGA AASAGTYILYA+H+AAMAPGTN+GAATP+ IGG L G +++ Sbjct: 104 PVPVASFVSPSGARAASAGTYILYASHIAAMAPGTNLGAATPIAIGGGL----FGNDEQE 159 Query: 153 GKEK----DGGAPSGTKDAMTAKVTNDAVAFIRSLAELRGRNADWAEKAVRDAATLSTNA 208 G+EK D P +A AK+ NDAVA+IR LAELR RN DWAE+AVR+AA+LS+ A Sbjct: 160 GEEKPGDPDKPEPRKPANAGEAKLINDAVAYIRGLAELRNRNVDWAERAVREAASLSSAA 219 Query: 209 ALQVHVIEFTAHDPADLLRQVDGRMVELAGGKTQRLATRDAAIEAIDPTWLSRVLAVITD 268 A + VI+FTA DLL+Q GR V + G RL T AIE + P W +R+L+VIT+ Sbjct: 220 AAREQVIDFTAVSVDDLLKQAHGRAVRI-GQSDVRLDTSGLAIEDLPPDWRTRLLSVITN 278 Query: 269 PNIAFVLLMVGIYGLIFEFMSPGAVAPGVVGTICLLLGLYALNMLPINYAGFALMLVGIA 328 PN+A +L+MVGIYGLIFEF++PG V PG +G I LLLGLYAL +LP++YAG L+L+G Sbjct: 279 PNVALLLMMVGIYGLIFEFLAPGTVVPGTIGGISLLLGLYALAVLPVSYAGVGLILLGAG 338 Query: 329 LLAIEAFNPTV-VIGLGGIVAFVLGAAMLFRIEAPGYALSW---SVIAIVAAMFAGLILV 384 LL EA P+ V+GLGG VA VLGAA+LF + PG +SW S IAI + F+ L+ Sbjct: 339 LLVAEAHAPSFGVLGLGGTVALVLGAAILFDTDMPGLQVSWPALSGIAIASLAFSLLVAR 398 Query: 385 VLGALRRARNGPLRTGAQAMRGLSAEVLDWSETSGHVFTNGERWQARGTETFKAGETVEV 444 + RR + + TGA+ M G+S +V W+ G+V +GERW+A +E+ GE V V Sbjct: 399 LALVSRRHK---VATGAEEMIGISGKVDSWAGADGYVIAHGERWRAVSSESLGPGEDVMV 455 Query: 445 ANINDLTLVVRRAPASAGEG 464 LTL V R A G+G Sbjct: 456 VGREGLTLKVARNAAPGGDG 475 >RSc0803 [O] COG1030 Membrane-bound serine protease (ClpP class) Rso Ralstonia solanacearum Length = 470 Score = 343 bits (879), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 204/429 (47%), Positives = 273/429 (63%), Gaps = 11/429 (2%) Query: 37 LTISIDGAIGPAAASYVKDGLAKAAERHAEVVILRLNTPGGLSTSMREIITDVLASPVPV 96 + + + GAIGPA+A+YV GL A + ++V+L+++TPGGL SMR+II +LASPVPV Sbjct: 34 MVLPLTGAIGPASAAYVVHGLELARKEGMQLVVLQMDTPGGLDASMRQIIQAILASPVPV 93 Query: 97 IGYVAPSGAHAASAGTYILYATHLAAMAPGTNIGAATPVQ--IGGPLPGLPGGTP-DKDG 153 GYVAP GA AASAGTYILYA+H+AAMAP TN+GAA+PV IGG P P TP D Sbjct: 94 AGYVAPGGARAASAGTYILYASHIAAMAPATNLGAASPVAIGIGGHAPTGPTPTPGDTAK 153 Query: 154 KEKDGGAPSGTKDAMTAKVTNDAVAFIRSLAELRGRNADWAEKAVRDAATLSTNAALQVH 213 A SG +D + K +DA A+IR LA LRGRNA+WAE+AVR+A +LS + A Sbjct: 154 PASAPAAASGNEDTLARKQMHDAAAYIRGLAHLRGRNAEWAERAVREAVSLSADEAATQR 213 Query: 214 VIEFTAHDPADLLRQVDGRMVELAGGKTQRLATRDAAIEAIDPTWLSRVLAVITDPNIAF 273 VI+ A + DLLRQVDGR + A G L T A E ++P W + LAVITDP++A Sbjct: 214 VIDLIATNIPDLLRQVDGRALRTATGLVT-LHTAGAPTETLEPDWRNHFLAVITDPSLAL 272 Query: 274 VLLMVGIYGLIFEFMSPGAVAPGVVGTICLLLGLYALNMLPINYAGFALMLVGIALLAIE 333 +LL VG+Y LIFEF +PG V PG++G +C+L+ LY L MLPINYAG AL+ +G+ + E Sbjct: 273 LLLTVGVYALIFEFSTPGMVVPGILGAMCILVALYGLQMLPINYAGLALLALGLGCMVAE 332 Query: 334 AFNPTV-VIGLGGIVAFVLGAAMLFRIEAPGYALSWSVIAIVAAMFAGLILVVLGALRRA 392 AF PT +G+GGI+AF+LGA ML + PGY + VI +A + +IL + RA Sbjct: 333 AFLPTFGALGVGGIIAFILGAVMLIDTQTPGYGVPIPVIVGLAFVSLTVILALSSLAVRA 392 Query: 393 RNGPLRTGAQAMRGLSAEVLDW------SETSGHVFTNGERWQARGTETFKAGETVEVAN 446 R P +G + G++ EV+D +++ G GERW+ R G+ V V Sbjct: 393 RRRPKVSGGDTLIGMTGEVVDVDTPEADADSDGWAHIRGERWRVRCDAGITRGDRVRVIA 452 Query: 447 INDLTLVVR 455 + LTL+V Sbjct: 453 RHGLTLMVE 461 >PA0451 [O] COG1030 Membrane-bound serine protease (ClpP class) Pae Pseudomonas aeruginosa Length = 443 Score = 333 bits (853), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 210/432 (48%), Positives = 280/432 (64%), Gaps = 22/432 (5%) Query: 38 TISIDGAIGPAAASYVKDGLAKAAERHAEVVILRLNTPGGLSTSMREIITDVLASPVPVI 97 +S+DGAIGPA+A Y+ G+ +AAE A++V+L L+TPGGL SMR I+ +LAS VPV Sbjct: 29 VLSVDGAIGPASADYLVRGIERAAEDGAQLVVLELDTPGGLDASMRRIVKAILASQVPVA 88 Query: 98 GYVAPSGAHAASAGTYILYATHLAAMAPGTNIGAATPVQIGGPLPGLPGGTPDKDGKEKD 157 G+VAPSGA AASAGTYILYA H+AAMAPGTN+GAATPV++ GTPDK ++ Sbjct: 89 GFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATPVRL---------GTPDKPAEKP- 138 Query: 158 GGAPSGTKDAMTAKVTNDAVAFIRSLAELRGRNADWAEKAVRDAATLSTNAALQVHVIEF 217 P+ D M K NDA A+IR LA+LRGRNA+WAE+AVR+A +L+ + A VI+ Sbjct: 139 ---PARDADPMARKQVNDAAAYIRGLAQLRGRNAEWAERAVREAVSLAAHEAAAQKVIDL 195 Query: 218 TAHDPADLLRQVDGRMVELAGGKTQRLATRDAAIEAIDPTWLSRVLAVITDPNIAFVLLM 277 A D DLLRQ+D R + + G + LAT A +E P W +R+LAV+TDP++A +L+M Sbjct: 196 QARDLPDLLRQLDSRSLRV-GERALTLATAGATVERQAPDWRARLLAVLTDPSVALILMM 254 Query: 278 VGIYGLIFEFMSPGAVAPGVVGTICLLLGLYALNMLPINYAGFALMLVGIALLAIEAFNP 337 +GIYGLIFE +PG PGV+G ICLLLGLYAL MLP+NYAG AL+ +G+A + EAF Sbjct: 255 IGIYGLIFELANPGMALPGVLGGICLLLGLYALQMLPVNYAGLALIALGLAFMVGEAFVA 314 Query: 338 TV-VIGLGGIVAFVLGAAMLFRIEAPGYALSWSVIAIVAAMFAGLILVVLGALRRARNGP 396 + V+G+GGIV+FV+GA +L E PGY + ++ +A + A LI+ +LG R R Sbjct: 315 SFGVLGIGGIVSFVVGALILIDTEVPGYGIPPGLVVALALLSAALIVGLLGMALRTRRQA 374 Query: 397 LRTGAQAMRGLSAEV--LDWSE-TSGHVFTNGERWQARGTETFKAGETVEVANINDLTLV 453 + +G + G A V +D + +G V GERW+ G+ V V L L Sbjct: 375 VVSGTAGLVGSLATVAAVDSEQPCAGWVLLQGERWRVLAARPLAVGQPVWVLARKGLLLE 434 Query: 454 VRRAPASAGEGG 465 V A A EGG Sbjct: 435 V----ALADEGG 442 >aq_1820 [O] COG1030 Membrane-bound serine protease (ClpP class) Aae Aquifex aeolicus Length = 425 Score = 244 bits (623), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/419 (36%), Positives = 235/419 (56%), Gaps = 21/419 (5%) Query: 42 DGAIGPAAASYVKDGLAKAAERHAEVVILRLNTPGGLSTSMREIITDVLASPVPVIGYVA 101 +G I P A YV+ + KA + + IL LNTPGGL SMR+II +P P++ YV Sbjct: 24 EGPITPTTADYVERTIQKAQKEGGTLYILLLNTPGGLVESMRKIIQSFETAPFPIVVYVY 83 Query: 102 PSGAHAASAGTYILYATHLAAMAPGTNIGAATPVQIGGPLPGLPGGTPDKDGKEKDGGAP 161 P G AASAG I A +AAMAPGTNIGAA PV TP K++ G Sbjct: 84 PPGGRAASAGAIITIAADIAAMAPGTNIGAAHPVL----------ATPQGREKKEKG--- 130 Query: 162 SGTKDAMTAKVTNDAVAFIRSLAELRGRNADWAEKAVRDAATLSTNAALQVHVIEFTAHD 221 KD M KV D +AF+R++A+ +GRN EK V+++ +LS AL+ VI+ A++ Sbjct: 131 ---KDVMMEKVLQDMLAFVRAIAKEKGRNVKVVEKMVKESLSLSAEEALKKGVIDLIAYN 187 Query: 222 PADLLRQVDGRMVELAGGKTQRLATRDAAIEAIDPTWLSRVLAVITDPNIAFVLLMVGIY 281 DLL +++G+ V+ + T+ + + P+ L +IT+P +A++LLM+G Y Sbjct: 188 LEDLLTKLEGKKVKKLNA-VYEIRTKGKEVVFLKPSLREEFLKIITNPTVAYLLLMLGFY 246 Query: 282 GLIFEFMSPGAVAPGVVGTICLLLGLYALNMLPINYAGFALMLVGIALLAIEAFNPTV-V 340 G+ FE +PGA+ PGV+G ICLLLGLY L+++ IN+ L+++GI +E PT Sbjct: 247 GIFFELYNPGAIIPGVLGAICLLLGLYGLSVISINWLALLLIVLGILFFVLELLTPTFGA 306 Query: 341 IGLGGIVAFVLGAAMLFRIEAPGYALSWSVIAIVAAMFAGLILVVLGAL-RRARNGPLRT 399 + LGG ++ +LG+ L +P Y + I ++F+ + + +G L +A+ T Sbjct: 307 LALGGAISILLGSLFLVEEGSP-YGEIPKQLIISVSIFSAIFFLGVGYLGLKAQKRKKLT 365 Query: 400 GAQAMRGLSAE-VLDWSETSGHVFTNGERWQARGTETFKAGETVEVANINDLTLVVRRA 457 G + M G E ++D+ G VF +GE W A + K G+TV+V L L+V+++ Sbjct: 366 GIEGMIGEEGEAIVDFKNGRGKVFVHGEIWDAVSEDDIKKGDTVKVVGAKGLKLIVKKS 424