BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0062.p         (60 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl999 [K] COG0583 Transcriptional regulator Atu Agrobacterium t...    96   2e-20
PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...    70   8e-13
SMb20494 [K] COG0583 Transcriptional regulator Sme Sinorhizobium...    67   1e-11
RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...    66   2e-11
RSc1729 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...    64   6e-11

>AGl999 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 345

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/55 (85%), Positives = 52/55 (94%)

Query: 1   LDRVDLFRIFARVVECASFTRAADTLGLPRSSVSSAVAELEQRVGARLLHRTTRK 55
           LDR+DLFRIF RVV+CASFTRAADTLG+PRSSVS+AV ELE RVGARLL+RTTRK
Sbjct: 47  LDRIDLFRIFTRVVDCASFTRAADTLGIPRSSVSAAVQELEGRVGARLLNRTTRK 101


>PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 297

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 1  LDRVDLFRIFARVVECASFTRAADTLGLPRSSVSSAVAELEQRVGARLLHRTTRK 55
          +DR+D  R+F RV E  SFT+AAD L +PR++VS+AV +LE ++G+RLLHRTTR+
Sbjct: 1  MDRLDSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQ 55


>SMb20494 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 298

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 41/54 (75%)

Query: 1  LDRVDLFRIFARVVECASFTRAADTLGLPRSSVSSAVAELEQRVGARLLHRTTR 54
          +DR D  R+FARV E  SFT AA+ LGLPRS+++ AV +LE R+G RLL RTTR
Sbjct: 1  MDRFDAMRVFARVAERRSFTLAAEDLGLPRSTITDAVKQLEGRLGVRLLQRTTR 54


>RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 315

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 1  LDRVDLFRIFARVVECASFTRAADTLGLPRSSVSSAVAELEQRVGARLLHRTTRK 55
          +DR+   ++F RVVE +SFT+AAD L LPR++V++ V  LE  +G RLLHRTTR+
Sbjct: 1  MDRLQAMQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRR 55


>RSc1729 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 306

 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%)

Query: 2  DRVDLFRIFARVVECASFTRAADTLGLPRSSVSSAVAELEQRVGARLLHRTTRK 55
          + ++  +IF RV E ASFTRAA++LG+P+ + S AV +LE  +G RLLHRTTRK
Sbjct: 3  NPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRK 56