BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0061.p (247 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl999 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 385 e-107 PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 298 7e-81 RSc1729 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 236 5e-62 RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 231 2e-60 PA2534 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 224 1e-58 >AGl999 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 345 Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust. Identities = 179/244 (73%), Positives = 210/244 (86%) Query: 1 VSPTHDGAAFYERALRVVADVEEAETLFRHAAAEPSGRLRVDVPGRIGRLIIAPALPAFL 60 VSPT DG+AFYER R++ADVE+ E LFR AA+PSGRLR+DVPGRIGRL+IAPALP FL Sbjct: 102 VSPTEDGSAFYERCQRLIADVEDTENLFRQTAAQPSGRLRIDVPGRIGRLVIAPALPQFL 161 Query: 61 DRYPQIDIDLGVTDRAINLIEDSVDCVVRVGPLGDSGLIARPLGNLTLINVASPGYLARH 120 D YPQIDI LGVTDRA++L+ED++DCV+RVGPL DSGLIARP+G L LINVASP YLA++ Sbjct: 162 DLYPQIDISLGVTDRAVDLVEDNIDCVLRVGPLSDSGLIARPIGKLRLINVASPAYLAQY 221 Query: 121 GTPRTPDDLGAHWAVNYASPSTGRIEEWEWSEQGASRSIAMRGRVTANSAEAYIACCLAG 180 G P+TP DL HWAVNYASPS+GR+E WEW E A S+ MR RVT N+AEAYIACCLAG Sbjct: 222 GAPKTPHDLSRHWAVNYASPSSGRVENWEWIENDALHSVPMRSRVTVNNAEAYIACCLAG 281 Query: 181 LGLIQIPVYDVKRHIDAGELVELMPRHRAAPMPMTLLYPHRQHLSRRLQVFADWLTDLLK 240 LGLIQIP YDV+ H+++GEL+E+MP HRA PMPMTLLY HRQHLSRRLQVFA+WL LL+ Sbjct: 282 LGLIQIPAYDVRLHLESGELIEVMPGHRAEPMPMTLLYSHRQHLSRRLQVFAEWLEALLR 341 Query: 241 QKLL 244 ++LL Sbjct: 342 RQLL 345 >PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 297 Score = 298 bits (763), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 138/243 (56%), Positives = 182/243 (74%), Gaps = 1/243 (0%) Query: 1 VSPTHDGAAFYERALRVVADVEEAETLFRHAAAEPSGRLRVDVPGRIGRLIIAPALPAFL 60 V THDG+ ER ++ D+EE E+LF H + SGRL+VDVP R+ RL+IAPALP F Sbjct: 56 VQLTHDGSVVLERCRHLLEDMEELESLF-HDGSRASGRLKVDVPSRVARLLIAPALPEFF 114 Query: 61 DRYPQIDIDLGVTDRAINLIEDSVDCVVRVGPLGDSGLIARPLGNLTLINVASPGYLARH 120 ++P I+++LG +DR+++L+++ VDCV+RVG LG+S L+AR LG + LIN ASP YL H Sbjct: 115 RQHPDIELELGSSDRSVDLVQEGVDCVLRVGQLGNSSLVARRLGEMQLINCASPAYLEEH 174 Query: 121 GTPRTPDDLGAHWAVNYASPSTGRIEEWEWSEQGASRSIAMRGRVTANSAEAYIACCLAG 180 G PRTP DL HWAVNYASPS+GR+ WE+ E G + + A+R RVT N+AE+YIACCL+G Sbjct: 175 GEPRTPADLDRHWAVNYASPSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSG 234 Query: 181 LGLIQIPVYDVKRHIDAGELVELMPRHRAAPMPMTLLYPHRQHLSRRLQVFADWLTDLLK 240 LGLIQIP YDV+ H+ GEL E++P+ RA MP LYPHR+HLSRR++ F DWL LL+ Sbjct: 235 LGLIQIPAYDVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLR 294 Query: 241 QKL 243 +L Sbjct: 295 ARL 297 >RSc1729 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 236 bits (601), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 115/243 (47%), Positives = 164/243 (67%) Query: 1 VSPTHDGAAFYERALRVVADVEEAETLFRHAAAEPSGRLRVDVPGRIGRLIIAPALPAFL 60 V T DG AF+ER+ ++AD+EE +T+FR + GRLRVD+P + R ++ PALPAFL Sbjct: 57 VQLTQDGQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFL 116 Query: 61 DRYPQIDIDLGVTDRAINLIEDSVDCVVRVGPLGDSGLIARPLGNLTLINVASPGYLARH 120 D +PQ++I+L TDR ++L+ + DCV+R+G LGDS LIARPLG L +N ASP Y+AR+ Sbjct: 117 DAHPQLEIELSSTDRRVDLVREGFDCVLRIGTLGDSSLIARPLGQLPQMNCASPAYIARY 176 Query: 121 GTPRTPDDLGAHWAVNYASPSTGRIEEWEWSEQGASRSIAMRGRVTANSAEAYIACCLAG 180 G PR+ DDL H V+Y + WE+ G + M G VT ++AE+Y A C AG Sbjct: 177 GMPRSLDDLDHHRLVHYVQTLGTKAPGWEYRIDGRTAHRPMPGVVTVSTAESYEAACQAG 236 Query: 181 LGLIQIPVYDVKRHIDAGELVELMPRHRAAPMPMTLLYPHRQHLSRRLQVFADWLTDLLK 240 LG+IQ PV + + GELVE++P++R APMP++L+YP+R++L R+QVF W+ + L Sbjct: 237 LGIIQAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWVAEQLA 296 Query: 241 QKL 243 L Sbjct: 297 PHL 299 >RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 315 Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 105/239 (43%), Positives = 163/239 (68%) Query: 1 VSPTHDGAAFYERALRVVADVEEAETLFRHAAAEPSGRLRVDVPGRIGRLIIAPALPAFL 60 V+ T DGAA+YER +R++ D+EE E F +A+ G LR+DVPG IG+ ++ P + F Sbjct: 56 VNVTADGAAYYERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFH 115 Query: 61 DRYPQIDIDLGVTDRAINLIEDSVDCVVRVGPLGDSGLIARPLGNLTLINVASPGYLARH 120 D YP + +++G++DR ++L+++ VDC VRVG L DS L+AR +G L+++N ASP YL R+ Sbjct: 116 DAYPGLQLEIGMSDRTVDLVQEGVDCAVRVGELQDSTLVARRIGQLSMVNCASPDYLERY 175 Query: 121 GTPRTPDDLGAHWAVNYASPSTGRIEEWEWSEQGASRSIAMRGRVTANSAEAYIACCLAG 180 GTPR+ +DL H AVNY SP GR +W++ G + +R V+ N AE+ +AC L G Sbjct: 176 GTPRSLEDLQDHIAVNYFSPRNGRRMDWDFVIDGQKQIHKVRSLVSVNDAESAMACALHG 235 Query: 181 LGLIQIPVYDVKRHIDAGELVELMPRHRAAPMPMTLLYPHRQHLSRRLQVFADWLTDLL 239 LGL+Q H+ +G+LVE++P + + P+P++++YPH +HLS +++VF DW+ L Sbjct: 236 LGLLQTARLLAYEHLQSGQLVEVLPDYISEPLPVSVIYPHNRHLSPKVRVFVDWVAMLF 294 >PA2534 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 303 Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 110/242 (45%), Positives = 158/242 (65%) Query: 1 VSPTHDGAAFYERALRVVADVEEAETLFRHAAAEPSGRLRVDVPGRIGRLIIAPALPAFL 60 VS T DG A+YER +R++AD+EEAE+ F P GRLRVD+PG +GR+ + P LP F Sbjct: 56 VSLTLDGQAYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFC 115 Query: 61 DRYPQIDIDLGVTDRAINLIEDSVDCVVRVGPLGDSGLIARPLGNLTLINVASPGYLARH 120 +RYP++++ L DR ++L+ + DCV+RVG L DS L+ R L +L + AS YL RH Sbjct: 116 ERYPELELQLSSNDRLVDLLREGADCVLRVGELHDSSLVGRHLADLPQVTCASAAYLERH 175 Query: 121 GTPRTPDDLGAHWAVNYASPSTGRIEEWEWSEQGASRSIAMRGRVTANSAEAYIACCLAG 180 G PR +LG H AVNY SPS+GR ++E+S G R++ MR RV+ N+A+AY+A C AG Sbjct: 176 GHPRQLAELGGHLAVNYQSPSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAG 235 Query: 181 LGLIQIPVYDVKRHIDAGELVELMPRHRAAPMPMTLLYPHRQHLSRRLQVFADWLTDLLK 240 LGLIQ P Y V + G L +++ + + +YP ++ LS R++VF DWL +L Sbjct: 236 LGLIQAPHYHVAAGLADGSLRQVLGEWLPPSLALHAVYPSQRQLSPRVRVFVDWLVELFG 295 Query: 241 QK 242 ++ Sbjct: 296 RQ 297