BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0052.p         (201 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2114 [GEPR] COG0477 Permeases of the major facilitator superfa...   124   1e-28
YPO1932 [GEPR] COG0477 Permeases of the major facilitator superf...   115   6e-26
RSp0234 [GEPR] COG0477 Permeases of the major facilitator superf...   114   2e-25
HI1104 [GEPR] COG0477 Permeases of the major facilitator superfa...    70   4e-12
PM0835 [GEPR] COG0477 Permeases of the major facilitator superfa...    69   7e-12

>PA2114 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 423

 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 95/165 (57%)

Query: 4   WLPTYLQTGLHLPVTHTAGYLAVNIFGSFVGPIAFGLIADRIGRRKGFMLFLVCQALNVA 63
           WLPT+L+T   L V  T+GYLA+ I GS+VG +    + D IGR+K F+LF V     V 
Sbjct: 258 WLPTFLKTERGLTVLGTSGYLAMVILGSYVGYVVSAFLTDLIGRKKNFVLFAVGSFTVVL 317

Query: 64  VYTQAPIGQGITVILGFFLGALQAGLASGLMPTFAELFPTSIRANGAGFALSAGRGLGSI 123
           +YTQ P+  G  + LGF LG   +G+ SG+     ELFPT IR +G GF  +AGR + ++
Sbjct: 318 LYTQLPVSNGAMLWLGFPLGFFASGIFSGMGSFLTELFPTRIRGSGQGFCYNAGRAIAAL 377

Query: 124 VPATVGILSTRMHLGDAMAICAICGYTAAFCAALLLPEQQGIDLR 168
            P  +G+L  ++ LG  +   A   Y     AAL LPE +G  L 
Sbjct: 378 FPMLIGMLGQKLSLGLGIGAFAAVSYGVVILAALSLPETRGKQLE 422


>YPO1932 [GEPR] COG0477 Permeases of the major facilitator superfamily Ype
           Yersinia pestis
          Length = 409

 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 92/166 (55%)

Query: 3   TWLPTYLQTGLHLPVTHTAGYLAVNIFGSFVGPIAFGLIADRIGRRKGFMLFLVCQALNV 62
           TWLPT+L+   +L V  T GYL V IFGSFVG I    + D++GRR   ++F +   + +
Sbjct: 244 TWLPTFLKLERNLSVIGTGGYLMVIIFGSFVGYICGAYLTDKLGRRANLIIFSLLSCITI 303

Query: 63  AVYTQAPIGQGITVILGFFLGALQAGLASGLMPTFAELFPTSIRANGAGFALSAGRGLGS 122
             YTQ  +     ++LGF LG   +G+ SG+     ELFP+++RA G GF  S GR +G+
Sbjct: 304 FAYTQLTLTNTQMLVLGFPLGFSASGIFSGMGAFLTELFPSAVRATGQGFTYSFGRAVGA 363

Query: 123 IVPATVGILSTRMHLGDAMAICAICGYTAAFCAALLLPEQQGIDLR 168
           + P  VG LS    L  A+ + A   Y      +LLLPE +   L 
Sbjct: 364 LFPGLVGYLSQSSSLAFAIGVFAGSAYCIVLVMSLLLPETKNKQLE 409


>RSp0234 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 416

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 94/167 (56%)

Query: 1   MITWLPTYLQTGLHLPVTHTAGYLAVNIFGSFVGPIAFGLIADRIGRRKGFMLFLVCQAL 60
           ++TWLPTYL+T  HL V  T GYLAV IF  + G +A   + D IGRR   +LF  C  +
Sbjct: 245 LMTWLPTYLKTERHLSVLGTGGYLAVIIFAFWCGCVASAWLLDVIGRRGNILLFSCCCVV 304

Query: 61  NVAVYTQAPIGQGITVILGFFLGALQAGLASGLMPTFAELFPTSIRANGAGFALSAGRGL 120
            V VY   P+  G  ++LGF LG   AG+ + +   F EL+P  +R  G GF  + GR +
Sbjct: 305 TVLVYLLVPLSDGAMLVLGFPLGFFAAGIPASMGALFNELYPHGVRGTGVGFCYNFGRVV 364

Query: 121 GSIVPATVGILSTRMHLGDAMAICAICGYTAAFCAALLLPEQQGIDL 167
            +  P  VG +S  M LG A+ I A   Y+    A L+LPE +G DL
Sbjct: 365 SAAFPVLVGKMSASMSLGTAIGIDAAIAYSIVAVAVLMLPETRGRDL 411


>HI1104 [GEPR] COG0477 Permeases of the major facilitator superfamily Hin
           Haemophilus influenzae
          Length = 407

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 1/164 (0%)

Query: 1   MITWLPTYLQTGLHLPVTHTAGYLAVNIFGSFVGPIAFGLIADRIGRRKGFMLFLVCQAL 60
           ++ WLP +L   L   +T +  + AV + G   G   FG +ADRIGR+  F+LF +   +
Sbjct: 241 IMIWLPNFLSKQLGFSLTKSGLWTAVTVCGMMAGIWIFGQLADRIGRKPSFLLFQLGAVI 300

Query: 61  NVAVYTQAPIGQGITVILGFFLGALQAGLASGLMPTFAELFPTSIRANGAGFALSAGRGL 120
           ++ VY+Q      I ++ G FLG    G+  G     AE +PT  RA       + GR +
Sbjct: 301 SIVVYSQLT-DPDIMLLAGAFLGMFVNGMLGGYGALMAEAYPTEARATAQNVLFNIGRAV 359

Query: 121 GSIVPATVGILSTRMHLGDAMAICAICGYTAAFCAALLLPEQQG 164
           G   P  VG +        A+A+ AI           L+PE +G
Sbjct: 360 GGFGPVVVGSVVLAYSFQTAIALLAIIYVIDMLATIFLIPELKG 403


>PM0835 [GEPR] COG0477 Permeases of the major facilitator superfamily Pmu
           Pasteurella multocida
          Length = 405

 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 1/167 (0%)

Query: 1   MITWLPTYLQTGLHLPVTHTAGYLAVNIFGSFVGPIAFGLIADRIGRRKGFMLFLVCQAL 60
           ++ W+P +L   L   +T +  + AV I G   G   FG +ADRIGR+  F+LF     +
Sbjct: 239 IMIWMPNFLSKQLGFSLTKSGVWTAVTICGMMFGIWLFGQLADRIGRKPSFLLFQFGAVI 298

Query: 61  NVAVYTQAPIGQGITVILGFFLGALQAGLASGLMPTFAELFPTSIRANGAGFALSAGRGL 120
           ++  Y+Q        +  G  LG    G+  G     +E +PT  RA       + GR +
Sbjct: 299 SIFTYSQMS-DPTYMLFAGAVLGMFVNGMMGGYGALMSEAYPTQARATAQNVLFNLGRAV 357

Query: 121 GSIVPATVGILSTRMHLGDAMAICAICGYTAAFCAALLLPEQQGIDL 167
           G   P  VG L +      A+A  A            L+PE +G  L
Sbjct: 358 GGFGPIVVGALVSTYSFQLAIAFLASIYIIDMIATIFLIPELKGKQL 404