BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0047.p (311 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 221 2e-57 BS_alsR [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis 197 2e-50 STM1487 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 192 6e-49 RSp1357 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 192 7e-49 RSp1326 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 192 7e-49 >PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 301 Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 132/301 (43%), Positives = 188/301 (62%), Gaps = 10/301 (3%) Query: 1 MDYRQLRYFIAVAEELSFSRAAKRLHVSQPPLSTQIKAMEEELGTRLLARTRRAVELTQA 60 M+ R LRYFIAVAEEL F RAA+RL +SQPPLS QI+A+EEE+G RL RT R VELT A Sbjct: 1 MELRHLRYFIAVAEELHFGRAAERLGISQPPLSQQIQALEEEIGARLFERTNRRVELTDA 60 Query: 61 GQLLLEHARRAVSELDLASETVRRAARGEAGMIRVGFTGSVPMLDMFAELFRSFRASYPR 120 G+L L+ +R+ ++++D A RRA GE G +++GFT S P +FR +YP Sbjct: 61 GRLFLDESRQVLAQVDKAVLLARRAHLGELGELKIGFTSSAPFTSTIPSSIHAFRKAYPD 120 Query: 121 VKIELRHMSTATQLRALADAELDVAIMRPPLDFRPAADLQVHVV--WRDRLMVFLPLDHP 178 V ++L+ MS+ L+AL + L V ++RP A VH V +R+ L+ L DHP Sbjct: 121 VHLDLQEMSSRQVLKALLEESLQVGVIRP-----LALPDAVHWVELFREPLVAVLRADHP 175 Query: 179 L-AGAKGALEMADLAEHEFVGMAES-GCGVGDQAAMLCRRAGFAPRVVQEAHELRTVLSL 236 L AG++ L +A LAE FV S G G+ DQ L R+AGF+PR+ QEA E T++ L Sbjct: 176 LAAGSEDGLAIAALAEEPFVFFPRSYGTGLYDQVIALTRQAGFSPRIAQEASEAMTIIGL 235 Query: 237 VAAGIGLSILPSCYQQAGVMNVVAKPLDTPDAESRM-LVAMRSSASLLPRRFVECALQAA 295 V+AG+G+SILP+ +++ V VV + L P+A + + LV ++ S L F++ + A Sbjct: 236 VSAGLGVSILPASFRRTRVDGVVYRTLSDPEATTAVWLVRRQNEGSPLALSFIDLVTREA 295 Query: 296 S 296 + Sbjct: 296 A 296 >BS_alsR [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis Length = 302 Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 174/300 (58%), Gaps = 7/300 (2%) Query: 1 MDYRQLRYFIAVAEELSFSRAAKRLHVSQPPLSTQIKAMEEELGTRLLARTRRAVELTQA 60 M+ R L+YFIAVAEEL F +AA+RL+++QPPLS QIK +EEE+G LL RT+R VELT A Sbjct: 1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKRTKRFVELTAA 60 Query: 61 GQLLLEHARRAVSELDLASETVRRAARGEAGMIRVGFTGSVPMLDMFAELFRSFRASYPR 120 G++ L H R A+ ++ E +R ARGE G++ +GF GS + + R +R +P Sbjct: 61 GEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGSA-TYEFLPPIVREYRKKFPS 119 Query: 121 VKIELRHMSTATQLRALADAELDVAIMRPPLDFRPAADLQVHVVWRDRLMVFLPLDHPLA 180 VKIELR +S++ Q L +D+ I+ PPL L + ++ LP HPL Sbjct: 120 VKIELREISSSRQQEELLKGNIDIGILHPPLQH---TALHIETAQSSPCVLALPKQHPLT 176 Query: 181 GAKGALEMADLAEHEFVGMA-ESGCGVGDQAAMLCRRAGFAPRVVQEAHELRTVLSLVAA 239 +K ++ + DL + + +A E+ + C +AGF P +VQEA E + V+ LV+A Sbjct: 177 -SKESITIEDLRDEPIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSA 235 Query: 240 GIGLSILPSCYQQAGVMNVVAKPLDTPDAESRMLVAMRS-SASLLPRRFVECALQAASRS 298 GIG++ +PS ++ ++V + +D + ++A R + + L + F+ + +R+ Sbjct: 236 GIGMTFVPSSAKKLFNLDVTYRKMDQIQLNAEWVIAYRKDNHNPLIKHFIHISNCQQTRT 295 >STM1487 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 299 Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 120/302 (39%), Positives = 172/302 (56%), Gaps = 9/302 (2%) Query: 1 MDYRQLRYFIAVAEELSFSRAAKRLHVSQPPLSTQIKAMEEELGTRLLARTRRAVELTQA 60 ++ R LRYF+AVAEEL F RAA RL++SQPPLS QI+ +E+++G RLLART R+V LT A Sbjct: 3 IELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQILEQQVGARLLARTNRSVALTAA 62 Query: 61 GQLLLEHARRAVSELDLASETVRRAARGEAGMIRVGFTGSVPMLDMFAELFRSFRASYPR 120 G+ L +R +S ++ A+ R +GEAG IR+GFT S P + + F FR SYP Sbjct: 63 GRQFLVDSRHILSLVNDAAARAERLHQGEAGEIRIGFTSSAPFIRAVSHTFSLFRQSYPG 122 Query: 121 VKIELRHMSTATQLRALADAELDVAIMRPPLDFRPAAD-LQVHVVWRDRLMVFLPLDHPL 179 V ++ R M+T Q+ L + LD+ ++R P D L V+ + LM +P +H L Sbjct: 123 VHMQTREMNTREQIAPLNEGVLDIGLLRNT----PLPDTLNREVILHEPLMAMIPREHRL 178 Query: 180 AGAKGALEMADLAEHEFVGM-AESGCGVGDQAAMLCRRAGFAPRVVQEAHELRTVLSLVA 238 A K + + +LAE FV G G+ D L RR +P + QE E T++ LVA Sbjct: 179 A-QKPVVSLTELAEEPFVFFDPHVGTGLYDDILGLMRRYNLSPTITQEVGEAMTIIGLVA 237 Query: 239 AGIGLSILPSCYQQAGVMNVVAKPLDTPDAESRMLVAM--RSSASLLPRRFVECALQAAS 296 AG+G+SILP+ +++ + + PL DA S M + S +RF + L AA Sbjct: 238 AGLGVSILPASFKRVQMSEMRWVPLAEEDAVSEMWLVWPKHHEQSHAVQRFCQLLLLAAR 297 Query: 297 RS 298 R Sbjct: 298 RD 299 >RSp1357 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 115/281 (40%), Positives = 162/281 (57%), Gaps = 5/281 (1%) Query: 1 MDYRQLRYFIAVAEELSFSRAAKRLHVSQPPLSTQIKAMEEELGTRLLARTRRAVELTQA 60 MD R+LRYF+ +AE L F RAA RL ++QPPLS QI+ +EEELG RL R R VELT A Sbjct: 1 MDLRRLRYFVVLAETLHFGRAALRLSIAQPPLSHQIRVLEEELGARLFDRNNRRVELTAA 60 Query: 61 GQLLLEHARRAVSELDLASETVRRAARGEAGMIRVGFTGSVPMLDMFAELFRSFRASYPR 120 G LL AR +++ + AS R RGE G +R+GFT + + + L ++R +P Sbjct: 61 GMALLPEARALLAQAEKASTIAARVERGELGELRIGFTSAAALTQVIPRLILAYRRDWPG 120 Query: 121 VKIELRHMSTATQLRALADAELDVAIMRPPL--DFRPAADLQVHVVWRDRLMVFLPLDHP 178 V++ +R ++T QL A+ + LD A +R D PA ++ D +V LP HP Sbjct: 121 VRLSIRELTTQEQLTAMLERRLDFAFVRGTAAPDLPPA--FGAVRLFEDAFVVALPPQHP 178 Query: 179 LAGAKGALEMADLAEHEFVGM-AESGCGVGDQAAMLCRRAGFAPRVVQEAHELRTVLSLV 237 A G+L + LA FV ESG G +Q LCR AGFAP+VVQEA T++ LV Sbjct: 179 CADNDGSLFVKALANEPFVMYPPESGTGAYEQVLSLCRHAGFAPQVVQEALSAATMVGLV 238 Query: 238 AAGIGLSILPSCYQQAGVMNVVAKPLDTPDAESRMLVAMRS 278 AAG+G++++P +Q+ V + L A+S M + R+ Sbjct: 239 AAGLGVALVPESFQRIEASGVAFRALRDSQAKSAMWLVFRA 279 >RSp1326 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 115/281 (40%), Positives = 162/281 (57%), Gaps = 5/281 (1%) Query: 1 MDYRQLRYFIAVAEELSFSRAAKRLHVSQPPLSTQIKAMEEELGTRLLARTRRAVELTQA 60 MD R+LRYF+ +AE L F RAA RL ++QPPLS QI+ +EEELG RL R R VELT A Sbjct: 1 MDLRRLRYFVVLAETLHFGRAALRLSIAQPPLSHQIRVLEEELGARLFDRNNRRVELTAA 60 Query: 61 GQLLLEHARRAVSELDLASETVRRAARGEAGMIRVGFTGSVPMLDMFAELFRSFRASYPR 120 G LL AR +++ + AS R RGE G +R+GFT + + + L ++R +P Sbjct: 61 GMALLPEARALLAQAEKASTIAARVERGELGELRIGFTSAAALTQVIPRLILAYRRDWPG 120 Query: 121 VKIELRHMSTATQLRALADAELDVAIMRPPL--DFRPAADLQVHVVWRDRLMVFLPLDHP 178 V++ +R ++T QL A+ + LD A +R D PA ++ D +V LP HP Sbjct: 121 VRLSIRELTTQEQLTAMLERRLDFAFVRGTAAPDLPPA--FGAVRLFEDAFVVALPPQHP 178 Query: 179 LAGAKGALEMADLAEHEFVGM-AESGCGVGDQAAMLCRRAGFAPRVVQEAHELRTVLSLV 237 A G+L + LA FV ESG G +Q LCR AGFAP+VVQEA T++ LV Sbjct: 179 CADNDGSLFVKALANEPFVMYPPESGTGAYEQVLSLCRHAGFAPQVVQEALSAATMVGLV 238 Query: 238 AAGIGLSILPSCYQQAGVMNVVAKPLDTPDAESRMLVAMRS 278 AAG+G++++P +Q+ V + L A+S M + R+ Sbjct: 239 AAGLGVALVPESFQRIEASGVAFRALRDSQAKSAMWLVFRA 279