BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0024.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0411 [E] COG0066 3-isopropylmalate dehydratase small subuni... 335 3e-92 SMc03795 [E] COG0066 3-isopropylmalate dehydratase small subunit... 332 3e-91 mll4408 [E] COG0066 3-isopropylmalate dehydratase small subunit ... 330 1e-90 AGc5065 [E] COG0066 3-isopropylmalate dehydratase small subunit ... 320 1e-87 SPAC9E9.03_2 [E] COG0066 3-isopropylmalate dehydratase small sub... 243 1e-64 >BMEII0411 [E] COG0066 3-isopropylmalate dehydratase small subunit Bme Brucella melitensis Length = 211 Score = 335 bits (860), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 156/201 (77%), Positives = 178/201 (88%), Gaps = 1/201 (0%) Query: 1 MDKFTTLEGVAAPLKIINVDTDMIIPKQYLKTIKRTGLGKGLFSEQRYKDDGSENPDFVL 60 MDKFT L GVAAPL I+N+DTDMIIPK YLKTIKRTGLGKGLF+E R+ +DGSENPDFVL Sbjct: 11 MDKFTKLTGVAAPLPIVNIDTDMIIPKDYLKTIKRTGLGKGLFAEMRFNEDGSENPDFVL 70 Query: 61 NQPAYRNAKVLVAGDNFGCGSSREHAPWALLDFGIRCVISTSFGDIFYNNCFKNGILPIR 120 N+P YR A++LVAGDNFGCGSSREHAPWALLD+GIRCVISTSF DIFYNNCFKNGILPI+ Sbjct: 71 NKPGYRKAQILVAGDNFGCGSSREHAPWALLDYGIRCVISTSFADIFYNNCFKNGILPIK 130 Query: 121 VSQEDLDKLFDDAERGANATLTIDLPNQEIRGPDGGKVKFEIDPFRKHCLINGLDDIGLT 180 V+QEDLDKL DDA RGANATLTIDL ++I GPDGG + F++D F++HCL+NGLDDIGLT Sbjct: 131 VAQEDLDKLMDDASRGANATLTIDLETKQIHGPDGGTISFDLDDFKRHCLLNGLDDIGLT 190 Query: 181 MEKKASIDSYETK-LKERAWA 200 MEK SID++E K +ER WA Sbjct: 191 MEKAKSIDTFEAKNAEERPWA 211 >SMc03795 [E] COG0066 3-isopropylmalate dehydratase small subunit Sme Sinorhizobium meliloti Length = 201 Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 155/201 (77%), Positives = 173/201 (86%), Gaps = 1/201 (0%) Query: 1 MDKFTTLEGVAAPLKIINVDTDMIIPKQYLKTIKRTGLGKGLFSEQRYKDDGSENPDFVL 60 MDKF L GVAAPL ++N+DTDMIIPK YLKTIKRTGLG GLF+E RY +DG+ NPDFVL Sbjct: 1 MDKFVKLTGVAAPLPVVNIDTDMIIPKDYLKTIKRTGLGTGLFAEARYNEDGTPNPDFVL 60 Query: 61 NQPAYRNAKVLVAGDNFGCGSSREHAPWALLDFGIRCVISTSFGDIFYNNCFKNGILPIR 120 N+PAY+NAK+LVAGDNFGCGSSREHAPWALLDFGIRCVISTSF DIFYNNCFKNGILPI Sbjct: 61 NKPAYQNAKILVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPIV 120 Query: 121 VSQEDLDKLFDDAERGANATLTIDLPNQEIRGPDGGKVKFEIDPFRKHCLINGLDDIGLT 180 VSQEDLDKL DDA RG+NA LT+DL QEI GPDGG +KFE+D F++HCL+NGLDDIGLT Sbjct: 121 VSQEDLDKLMDDASRGSNAILTVDLEAQEITGPDGGSIKFEVDAFKRHCLLNGLDDIGLT 180 Query: 181 MEKKASIDSYE-TKLKERAWA 200 +EK SID+YE R WA Sbjct: 181 LEKGGSIDNYEKATAASRPWA 201 >mll4408 [E] COG0066 3-isopropylmalate dehydratase small subunit Mlo Mesorhizobium loti Length = 201 Score = 330 bits (847), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 154/201 (76%), Positives = 177/201 (88%), Gaps = 1/201 (0%) Query: 1 MDKFTTLEGVAAPLKIINVDTDMIIPKQYLKTIKRTGLGKGLFSEQRYKDDGSENPDFVL 60 M+KFT L GVAAP+ I+NVDTDMIIPK YLKTIKRTGLG GLF+E RY DDGSENPDFVL Sbjct: 1 MEKFTKLTGVAAPMPIVNVDTDMIIPKDYLKTIKRTGLGTGLFAEMRYNDDGSENPDFVL 60 Query: 61 NQPAYRNAKVLVAGDNFGCGSSREHAPWALLDFGIRCVISTSFGDIFYNNCFKNGILPIR 120 N+PAYR A++LVAGDNFGCGSSREHAPWALLDFGIRCVISTSF DIFYNNCFKNG+LPI Sbjct: 61 NKPAYRKAQILVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGVLPIT 120 Query: 121 VSQEDLDKLFDDAERGANATLTIDLPNQEIRGPDGGKVKFEIDPFRKHCLINGLDDIGLT 180 VS EDL+KL DDA RG+NATL++DL +EIRGPDGG VKF++D F++HC++NGLDDIGLT Sbjct: 121 VSPEDLEKLMDDASRGSNATLSVDLEAKEIRGPDGGVVKFDLDDFKRHCMLNGLDDIGLT 180 Query: 181 MEKKASIDSYETK-LKERAWA 200 MEK +I S+E K ++R WA Sbjct: 181 MEKAGAIASFEKKNAEQRPWA 201 >AGc5065 [E] COG0066 3-isopropylmalate dehydratase small subunit Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 216 Score = 320 bits (820), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 147/201 (73%), Positives = 172/201 (85%), Gaps = 1/201 (0%) Query: 1 MDKFTTLEGVAAPLKIINVDTDMIIPKQYLKTIKRTGLGKGLFSEQRYKDDGSENPDFVL 60 M+KFT L GVAAP+ ++N+DTDMIIPK YLKTIKRTGLGKGLF+E RY +DGS NPDFVL Sbjct: 16 MEKFTKLTGVAAPMPVVNIDTDMIIPKDYLKTIKRTGLGKGLFAESRYLEDGSPNPDFVL 75 Query: 61 NQPAYRNAKVLVAGDNFGCGSSREHAPWALLDFGIRCVISTSFGDIFYNNCFKNGILPIR 120 N+PAY+NA++LVAGDNFGCGSSREHAPWALLDFGIRCVISTSF DIFYNNCFKNGILP+ Sbjct: 76 NKPAYQNAQILVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPVV 135 Query: 121 VSQEDLDKLFDDAERGANATLTIDLPNQEIRGPDGGKVKFEIDPFRKHCLINGLDDIGLT 180 VS E+L+KL DDA RG+NA L+IDL QEI GPDGG + FEID F++HC++NGLDDIGLT Sbjct: 136 VSPENLEKLLDDASRGSNAVLSIDLERQEISGPDGGTITFEIDEFKRHCMLNGLDDIGLT 195 Query: 181 MEKKASIDSYE-TKLKERAWA 200 +E +ID++E R WA Sbjct: 196 LEHAGAIDTFEKANASVRPWA 216 >SPAC9E9.03_2 [E] COG0066 3-isopropylmalate dehydratase small subunit Spo Schizosaccharomyces pombe Length = 220 Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 119/194 (61%), Positives = 146/194 (75%), Gaps = 3/194 (1%) Query: 3 KFTTLEGVAAPLKIINVDTDMIIPKQYLKTIKRTGLGKGLFSEQRYKDDGSENPDFVLNQ 62 KFT +EG+AAPL + NVDTD IIPKQ+LKTIKRTGLG+ F E RY DG E PDFVLN+ Sbjct: 1 KFTVVEGIAAPLPMANVDTDKIIPKQFLKTIKRTGLGQFAFYEIRYDADGKEIPDFVLNR 60 Query: 63 PAYRNAKVLVAGDNFGCGSSREHAPWALLDFGIRCVISTSFGDIFYNNCFKNGILPIRVS 122 YR+A VLVA DNFGCGSSREHAPWAL DFGIR +I+ SF DIF+NNCFKNG+LPI Sbjct: 61 EPYRHATVLVAHDNFGCGSSREHAPWALNDFGIRVIIAPSFADIFFNNCFKNGMLPIPTP 120 Query: 123 QEDLDKLFDDAERGANATLTIDLPNQEIRGPDGGKVKFEIDPFRKHCLINGLDDIGLTME 182 E ++ + AE ++DL NQ I D +VKF+++PFRKHCL+NGLDDIGLT++ Sbjct: 121 IEQVNDMMKAAEN--QVKFSVDLVNQTITYGD-KQVKFDVEPFRKHCLVNGLDDIGLTLQ 177 Query: 183 KKASIDSYETKLKE 196 K+ ID++E +E Sbjct: 178 KETMIDAFEAAREE 191