BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0006.p (229 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr7511 [K] COG1678 Putative transcriptional regulator Mlo Mesor... 224 2e-58 SMc00019 [K] COG1678 Putative transcriptional regulator Sme Sino... 220 2e-57 AGc1427 [K] COG1678 Putative transcriptional regulator Atu Agrob... 218 1e-56 BMEI1454 [K] COG1678 Putative transcriptional regulator Bme Bruc... 216 5e-56 CC3395 [K] COG1678 Putative transcriptional regulator Ccr Caulob... 180 2e-45 >mlr7511 [K] COG1678 Putative transcriptional regulator Mlo Mesorhizobium loti Length = 202 Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/211 (54%), Positives = 143/211 (67%), Gaps = 13/211 (6%) Query: 19 KTRKTAAGRRPAVGAHAAEGGYLDGQMLIAMPVMDDPRFERSVIYMCAHSSEGAMGIIVN 78 + +KTAAGR G+LD Q LIAMP M D RF RSVIY+CAHS EGAMG+I+N Sbjct: 5 RHKKTAAGR-----------GFLDDQFLIAMPGMKDDRFTRSVIYICAHSDEGAMGLIIN 53 Query: 79 RPAGSIDFPGLLVQLDIIEKSDQIQLPENAEMMKVMKGGPVDTGRGFVLHSSDFYIQDAT 138 + + FP LLVQL I+ + + I+LP A V GGPVD RGFVLHS D+ ++ ++ Sbjct: 54 QTQQML-FPDLLVQLGIMNEQEAIRLPAQARDFVVRNGGPVDRSRGFVLHSGDYRVE-SS 111 Query: 139 LNIDDGISLTATVDILKAIAKGAGPKHAILALGYAGWAPGQLENEIQHNGWLHCDADPEL 198 L + D I LTATVDIL+AI+ G GP+HA++ALGY+GW GQLE EI NGWL C A PEL Sbjct: 112 LTVSDDICLTATVDILRAISSGRGPRHALMALGYSGWGAGQLETEIAENGWLTCPASPEL 171 Query: 199 IFGTDVDEKYARALRKIGIEAGMLSNDAGHA 229 +F D++ KY R L IGI+ LS AGHA Sbjct: 172 LFDADIERKYDRILASIGIDLAHLSLAAGHA 202 >SMc00019 [K] COG1678 Putative transcriptional regulator Sme Sinorhizobium meliloti Length = 201 Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 105/193 (54%), Positives = 137/193 (70%), Gaps = 2/193 (1%) Query: 37 EGGYLDGQMLIAMPVMDDPRFERSVIYMCAHSSEGAMGIIVNRPAGSIDFPGLLVQLDII 96 E G+LDGQ LIAMP M D F R+VI++CAHS +GAMG I+NRP + FP +L+ L ++ Sbjct: 11 ERGFLDGQFLIAMPGMFDTNFARTVIFVCAHSEDGAMGFILNRPQ-RLTFPDVLLHLQLL 69 Query: 97 EKSDQIQLPENAEMMKVMKGGPVDTGRGFVLHSSDFYIQDATLNIDDGISLTATVDILKA 156 + + I+LP ++ GGPV+TGRGFVLHS D Y+ D+++ + D I LTAT+DI++A Sbjct: 70 DPDEAIRLPSATREFQIQAGGPVETGRGFVLHSDD-YLSDSSIPVSDDICLTATLDIVRA 128 Query: 157 IAKGAGPKHAILALGYAGWAPGQLENEIQHNGWLHCDADPELIFGTDVDEKYARALRKIG 216 I++G GP A + LGYAGW PGQLE EI NGWL C A ELIF D+DEKY RAL +G Sbjct: 129 ISRGEGPLKATMLLGYAGWGPGQLEAEITQNGWLTCPAQEELIFSRDLDEKYDRALALMG 188 Query: 217 IEAGMLSNDAGHA 229 + MLS D+GHA Sbjct: 189 VSPAMLSTDSGHA 201 >AGc1427 [K] COG1678 Putative transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 227 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 106/193 (54%), Positives = 136/193 (70%), Gaps = 2/193 (1%) Query: 37 EGGYLDGQMLIAMPVMDDPRFERSVIYMCAHSSEGAMGIIVNRPAGSIDFPGLLVQLDII 96 E G D Q LIAMP +DD F RSVIY+CAHS GAMG I+NRP I F +L+ L ++ Sbjct: 37 ERGSFDSQFLIAMPGLDDGNFARSVIYICAHSDAGAMGFIINRPQ-QITFTDILLHLKLV 95 Query: 97 EKSDQIQLPENAEMMKVMKGGPVDTGRGFVLHSSDFYIQDATLNIDDGISLTATVDILKA 156 + +D I LP + GGPV++GRGFVLHS D Y+ ++++ + D ISLTAT+DI++A Sbjct: 96 DSNDAIMLPNRTREFPIQCGGPVESGRGFVLHSDD-YLSESSIPVSDDISLTATLDIVRA 154 Query: 157 IAKGAGPKHAILALGYAGWAPGQLENEIQHNGWLHCDADPELIFGTDVDEKYARALRKIG 216 I+ G GP+ A + LGYAGW PGQLENEI +NGWL+C A ELIF +D KY RAL +G Sbjct: 155 ISNGRGPQKATMMLGYAGWGPGQLENEIANNGWLNCPAAEELIFDRGLDNKYERALALMG 214 Query: 217 IEAGMLSNDAGHA 229 ++A MLS DAGHA Sbjct: 215 VDARMLSTDAGHA 227 >BMEI1454 [K] COG1678 Putative transcriptional regulator Bme Brucella melitensis Length = 210 Score = 216 bits (549), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 105/195 (53%), Positives = 141/195 (72%), Gaps = 2/195 (1%) Query: 35 AAEGGYLDGQMLIAMPVMDDPRFERSVIYMCAHSSEGAMGIIVNRPAGSIDFPGLLVQLD 94 + E G+L+GQ L+AMP M D RF RSV+Y+CAHS EGAMG I+N+ + FP LL Q+ Sbjct: 18 SQEQGFLNGQFLLAMPGMSDERFARSVVYICAHSDEGAMGFIINQ-LQPVQFPDLLRQIG 76 Query: 95 IIEKSDQIQLPENAEMMKVMKGGPVDTGRGFVLHSSDFYIQDATLNIDDGISLTATVDIL 154 +I + D I LP+ A+ M V GGPVD RGFVLHS D Y+ D+T+ + D + LTATVDIL Sbjct: 77 VIGEEDLIILPDRAQHMVVRNGGPVDRTRGFVLHSDD-YMVDSTMPVSDDVCLTATVDIL 135 Query: 155 KAIAKGAGPKHAILALGYAGWAPGQLENEIQHNGWLHCDADPELIFGTDVDEKYARALRK 214 +AI G GP+ A++ALGY+GWAPGQLE E+ NGWL CDA +++F +D++ KY+R + Sbjct: 136 RAIYGGGGPERALMALGYSGWAPGQLEMEVAENGWLTCDAPLDMLFDSDIEGKYSRLMLH 195 Query: 215 IGIEAGMLSNDAGHA 229 +GI+ L +DAGHA Sbjct: 196 MGIDMSRLVSDAGHA 210 >CC3395 [K] COG1678 Putative transcriptional regulator Ccr Caulobacter vibrioides Length = 195 Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/194 (48%), Positives = 129/194 (66%), Gaps = 8/194 (4%) Query: 37 EGGYLDGQMLIAMPVMDDPRFERSVIYMCAHSSEGAMGIIVNRPAGSIDFPGLLVQLDII 96 +G +L G++L+AMP ++DPRFER+V+Y+CAH + AMG+ VNRP + LL +L + Sbjct: 9 DGEFLIGRLLVAMPGIEDPRFERTVLYLCAHDEDAAMGLAVNRPVEGLTVFELLNRLGV- 67 Query: 97 EKSDQIQLPENAEMMKVMKGGPVDTGRGFVLHSSDFYIQDATLNIDDGISLTATVDILKA 156 +IQ P + V+ GGP++ RGFVLH+ DF D+TL + DG++LTAT D L A Sbjct: 68 --RSEIQAPSDL----VLLGGPLERERGFVLHTDDFSSPDSTLPVADGVALTATRDALDA 121 Query: 157 IAKGAG-PKHAILALGYAGWAPGQLENEIQHNGWLHCDADPELIFGTDVDEKYARALRKI 215 +A P+ ++LALGYAGW PGQLE E++ N WL CDAD L+F D + K+ RAL K+ Sbjct: 122 MASAIKRPRKSLLALGYAGWGPGQLEQELRDNVWLICDADEGLLFDEDHEHKWTRALAKL 181 Query: 216 GIEAGMLSNDAGHA 229 GI A LS AG A Sbjct: 182 GITADHLSATAGRA 195