BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0001.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC3460 Non COG                                                        208   5e-54

>CC3460 Non COG
          Length = 581

 Score =  208 bits (529), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/158 (65%), Positives = 122/158 (77%)

Query: 1   MLYVPFLNYADGNLDAVHEMLREPSAVPGLSDGGAHCGIICDASFPTYLLTHWTRDRSRG 60
           MLY PFLNYADG+LD    ML     VPGLSDGGAH G+ICD SFPT  L HWTRDR+RG
Sbjct: 415 MLYHPFLNYADGSLDPSFAMLSHRDTVPGLSDGGAHVGMICDGSFPTSNLIHWTRDRTRG 474

Query: 61  EKLSIPFVVAAQSRKTALSVGLHDRGVIAPGFKADVNVIDYDRLHLHPPKVHYDLPVGGR 120
            ++ +  ++A QSR TA +VGL DRG+IAPG++AD+NVIDY  L L  P+V YDLP GGR
Sbjct: 475 PRIPLGTMIARQSRDTAQAVGLLDRGLIAPGYRADLNVIDYAGLRLEAPQVAYDLPAGGR 534

Query: 121 RLLQQVDGYDATIVSGIVTQREGKATGARPGRLVRGAQ 158
           RL Q+  GY ATIV+G+VTQR+G+ TGA PGRLVRGAQ
Sbjct: 535 RLTQRAHGYVATIVAGVVTQRDGEPTGALPGRLVRGAQ 572