BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0042.p         (66 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RP608 [J] COG0291 Ribosomal protein L35 Rpr Rickettsia prowazekii      87   7e-18
AGc437 [J] COG0291 Ribosomal protein L35 Atu Agrobacterium tumef...    87   7e-18
msl5059 [J] COG0291 Ribosomal protein L35 Mlo Mesorhizobium loti       86   3e-17
RC0934 [J] COG0291 Ribosomal protein L35 Rco Rickettsia conorii        85   4e-17
SMc00363 [J] COG0291 Ribosomal protein L35 Sme Sinorhizobium mel...    84   9e-17

>RP608 [J] COG0291 Ribosomal protein L35 Rpr Rickettsia prowazekii
          Length = 67

 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 50/64 (78%)

Query: 1  MPKLKTKSGAKKRFKVTATGKVMHAQRGKRHGMIKRTKKQIRQLRGTRVLFKTDGDNVKK 60
          MPKLKTKS  KKRFK TATGKV+ +Q GK+H M +RTK QIR LRGT +L   DG N+KK
Sbjct: 1  MPKLKTKSAVKKRFKFTATGKVIASQAGKKHFMRRRTKAQIRNLRGTTILCPQDGHNIKK 60

Query: 61 YFLP 64
          YFLP
Sbjct: 61 YFLP 64


>AGc437 [J] COG0291 Ribosomal protein L35 Atu Agrobacterium tumefaciens
          strain C58 (Cereon)
          Length = 67

 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 50/65 (76%)

Query: 1  MPKLKTKSGAKKRFKVTATGKVMHAQRGKRHGMIKRTKKQIRQLRGTRVLFKTDGDNVKK 60
          MPK+KTKS AKKRFK+TATGKV+ A  GKRHGMIKRT K IR  RGT VL + DG  V K
Sbjct: 1  MPKMKTKSAAKKRFKITATGKVVAAAAGKRHGMIKRTNKFIRDARGTMVLAEADGKKVVK 60

Query: 61 YFLPN 65
           +LPN
Sbjct: 61 NYLPN 65


>msl5059 [J] COG0291 Ribosomal protein L35 Mlo Mesorhizobium loti
          Length = 67

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 49/65 (75%)

Query: 1  MPKLKTKSGAKKRFKVTATGKVMHAQRGKRHGMIKRTKKQIRQLRGTRVLFKTDGDNVKK 60
          MPK+KTKS AKKRFK+T TGKV+ A  GKRHGMIKR+ K IR  RGT VL + DG  V K
Sbjct: 1  MPKMKTKSAAKKRFKITGTGKVLSAAAGKRHGMIKRSNKFIRNARGTMVLAEPDGKKVIK 60

Query: 61 YFLPN 65
           FLPN
Sbjct: 61 NFLPN 65


>RC0934 [J] COG0291 Ribosomal protein L35 Rco Rickettsia conorii
          Length = 89

 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query: 1  MPKLKTKSGAKKRFKVTATGKVMHAQRGKRHGMIKRTKKQIRQLRGTRVLFKTDGDNVKK 60
          MPKLKTKS  KKRFK+TA+GKV+ +Q GK+H M +RTK QIR LRGT +L   D  N+KK
Sbjct: 22 MPKLKTKSAVKKRFKLTASGKVIASQAGKKHFMRRRTKAQIRNLRGTTILCPQDRYNIKK 81

Query: 61 YFLP 64
          YFLP
Sbjct: 82 YFLP 85


>SMc00363 [J] COG0291 Ribosomal protein L35 Sme Sinorhizobium meliloti
          Length = 67

 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 49/65 (75%)

Query: 1  MPKLKTKSGAKKRFKVTATGKVMHAQRGKRHGMIKRTKKQIRQLRGTRVLFKTDGDNVKK 60
          MPK+KTKS AKKRFK+TATGKV  A  GKRHGMIKR+ K IR  RGT VL + DG  V K
Sbjct: 1  MPKMKTKSSAKKRFKITATGKVRAAAAGKRHGMIKRSNKFIRDARGTMVLAEPDGKKVVK 60

Query: 61 YFLPN 65
           +LPN
Sbjct: 61 NYLPN 65