BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0029.p (912 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02152 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fam... 220 1e-56 VNG7099 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 218 5e-56 VNG6139G [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fam... 218 5e-56 Cgl0717 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 185 4e-46 ECs5261 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 173 1e-42 >SMc02152 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Sme Sinorhizobium meliloti Length = 1170 Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 169/510 (33%), Positives = 258/510 (50%), Gaps = 40/510 (7%) Query: 6 LLIADDVGLGKTIEAGLVIQELLLRHRARTVFVVCPASLQEKWRVEMQEKFGLEFKIVDT 65 ++ADD G GKTI AGL I+EL++R + + +V P SL E+WR E+ EKFGLEF + + Sbjct: 124 FVLADDPGAGKTIMAGLYIRELIMRADSHRILIVAPGSLVEQWRDELHEKFGLEFYVYSS 183 Query: 66 AYVKELRRGRGIHANPWTSFPRLITSIDWIKSGEALRMLRDVLPVRSSYPRKFDILVVDE 125 + G NP+ +PRLI +D I E L+D L +D+ V DE Sbjct: 184 LLEQTSPSG-----NPFEDYPRLIVRLDQISRNEE---LQDKLCAPG-----WDLAVFDE 230 Query: 126 AHNVAPAGSAHY----VLESQRTQLIRKIAPHFQHRLFLTATPHNGYTESFTSLLELLDD 181 AH + SAHY + ++ R + K+ H +H L +TATPHNG E F L LLD Sbjct: 231 AHKL----SAHYFGSKLEKTGRFRFAEKLGAHVRHLLLMTATPHNGKEEDFQLFLSLLDS 286 Query: 182 QRFSRNILPDDKQL--SQVMVRRLKTDLLDKAGKPLYPKRNLQALAVPFTADERRMQKLL 239 RF ++ S +M R +K +L+ G PL+P+R + + E + + + Sbjct: 287 DRFYGKFRDGVHKVDASDLMRRMVKEELVKFDGTPLFPERKAYTVNYELSPIEAALYEAV 346 Query: 240 EAYCASREKTCAQ---AGTAATSFINNLLKKRLFSSPAAFASTLERHYATLTSGKATQKA 296 Y + Q A + F L++RL SSP A +L+R L + +K Sbjct: 347 TNYVQTEMGKADQLEGARKGSVGFALTALQRRLASSPEAIFQSLKRRRERLENRLRDEKL 406 Query: 297 DELSDRILRKAILKA--EEDYADDAEVEAAQAEAVDEATKRSAPLTAHEERMIDEMREWA 354 L + A +ED E E+ + +D+AT +A A E I ++ Sbjct: 407 GIKGRNALAETYATAPEDEDELSAEEQESLEENLIDDAT--AAKTVAELEAEIVILKGLE 464 Query: 355 QKASRRIDSKARAIIDWLEANLKTSG---DWNG--RRVILFTEYRTTHQWLQQILASHGF 409 +A + S D L L+ + D +G R++I+F+E+R T +LQ +A Sbjct: 465 AQAKSVVASGQDRKWDELSRILQNNPEMRDASGRQRKIIIFSEHRDTLNYLQARIAGVLG 524 Query: 410 GGDRLSLIHGGMDHEERERVKAAFQTNPDDAPVRILLATDAASEGIDLQNYCNCLIHVEI 469 D + IHGG +ER R++A F+++ D VR+L+ATDAA EG++LQN N +++ ++ Sbjct: 525 NPDAIVTIHGGTHRDERRRLQALFRSDLD---VRVLVATDAAGEGVNLQN-ANLMVNYDL 580 Query: 470 PYNPNVMEQRNGRIDRHGQKEAEVLIWHPV 499 P+NPN +EQR GRI R GQ E +W+ V Sbjct: 581 PWNPNRLEQRFGRIHRIGQTEV-CHLWNLV 609 >VNG7099 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Hbs Halobacterium sp. NRC-1 Length = 979 Score = 218 bits (556), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 159/490 (32%), Positives = 260/490 (53%), Gaps = 38/490 (7%) Query: 7 LIADDVGLGKTIEAGLVIQELLLRHRARTVFVVCPASLQEKWRVEMQEKFGLEFKIVDTA 66 LI D+VGLGKTIEAG+V +EL+ R RA+ V +V PA L +W+ EM+EKF F I D Sbjct: 120 LIGDEVGLGKTIEAGIVTEELIARGRAQRVLIVAPAPLTVQWQQEMREKFDRNFVIYDRE 179 Query: 67 YVKELRRGRGIHANPWTSFPRLITSIDWIKSGEALRMLRDV-LPVRSSYPRKFDILVVDE 125 V+ R + N W +ITSID+ K + L LR++ +P +D+ V DE Sbjct: 180 TVR-THRNSHPNQNVWLQEDLIITSIDFAKQDDVLEALRNLDVP--------WDLAVFDE 230 Query: 126 AHNV-APAGSAHYVLESQRTQLIRKIAPHFQHRLFLTATPHNGYTESFTSLLELLDDQRF 184 AH++ A GS + +QR + +A + L LT TPH G ++ F ++ LLD RF Sbjct: 231 AHHLTARRGSDESIERTQRYTVGEAVAENSDALLLLTGTPHKGKSDQFYFMVNLLDPYRF 290 Query: 185 SR--NILPDDKQLSQVMVRRLKTDLLDKAGKPLYPKRNLQALAVPFTADERRMQKLLEAY 242 I PD +L +M+RRLK D+ + G ++P++N++AL V + ER++ + Y Sbjct: 291 GHESQIHPD--ELDDLMIRRLKEDMYETDGTRMFPEKNIEALGVEMSPAERKLYDDVTEY 348 Query: 243 CASREKTCAQAGTAATSFINNLLKKRLFSSPAAFASTLE-RHYATLTSGKATQKADELSD 301 Q A F + +KRL SS A +LE R A A D++ + Sbjct: 349 IREYYNLAQQEENKAAGFTMVIYQKRLVSSIYAIQKSLENRMRAIQNDAVAEDLPDDVQE 408 Query: 302 RILRKAILKAEEDYADDAEVEAAQAEAVDEATKRSAPLTAHEERMIDEMRE-WAQKASRR 360 I R + E + DAE E +A A++ T EE +D +++ W Q S Sbjct: 409 LIPRYS---TEPETLTDAERERVEA-ALETVTVTLNQSQIQEE--LDRVKQLWRQAKSIE 462 Query: 361 IDSKARAIIDWLEANLKTSGDWNGRRVILFTEYRTTHQWLQ-QILASHGFGGDRLSLIHG 419 DSKA+ + +++ L D ++++FTEY T ++L+ ++ A + ++ ++G Sbjct: 463 TDSKAQMLKQFVDRILTEDPD---EKILIFTEYTDTLEYLRDRVFAEYD-----IAQVYG 514 Query: 420 GMDHEERERVKAAFQTNPDDAPVRILLATDAASEGIDLQNYCNCLIHVEIPYNPNVMEQR 479 +D + R + A F+ + I++ATDAA EG++LQ + + + + ++P++P ++QR Sbjct: 515 DLDQDRRRQEMADFENEKN-----IMIATDAAQEGLNLQ-FAHIMANFDLPWSPTRIDQR 568 Query: 480 NGRIDRHGQK 489 GR+ R+GQ+ Sbjct: 569 MGRLHRYGQE 578 >VNG6139G [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Hbs Halobacterium sp. NRC-1 Length = 979 Score = 218 bits (556), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 159/490 (32%), Positives = 260/490 (53%), Gaps = 38/490 (7%) Query: 7 LIADDVGLGKTIEAGLVIQELLLRHRARTVFVVCPASLQEKWRVEMQEKFGLEFKIVDTA 66 LI D+VGLGKTIEAG+V +EL+ R RA+ V +V PA L +W+ EM+EKF F I D Sbjct: 120 LIGDEVGLGKTIEAGIVTEELIARGRAQRVLIVAPAPLTVQWQQEMREKFDRNFVIYDRE 179 Query: 67 YVKELRRGRGIHANPWTSFPRLITSIDWIKSGEALRMLRDV-LPVRSSYPRKFDILVVDE 125 V+ R + N W +ITSID+ K + L LR++ +P +D+ V DE Sbjct: 180 TVR-THRNSHPNQNVWLQEDLIITSIDFAKQDDVLEALRNLDVP--------WDLAVFDE 230 Query: 126 AHNV-APAGSAHYVLESQRTQLIRKIAPHFQHRLFLTATPHNGYTESFTSLLELLDDQRF 184 AH++ A GS + +QR + +A + L LT TPH G ++ F ++ LLD RF Sbjct: 231 AHHLTARRGSDESIERTQRYTVGEAVAENSDALLLLTGTPHKGKSDQFYFMVNLLDPYRF 290 Query: 185 SR--NILPDDKQLSQVMVRRLKTDLLDKAGKPLYPKRNLQALAVPFTADERRMQKLLEAY 242 I PD +L +M+RRLK D+ + G ++P++N++AL V + ER++ + Y Sbjct: 291 GHESQIHPD--ELDDLMIRRLKEDMYETDGTRMFPEKNIEALGVEMSPAERKLYDDVTEY 348 Query: 243 CASREKTCAQAGTAATSFINNLLKKRLFSSPAAFASTLE-RHYATLTSGKATQKADELSD 301 Q A F + +KRL SS A +LE R A A D++ + Sbjct: 349 IREYYNLAQQEENKAAGFTMVIYQKRLVSSIYAIQKSLENRMRAIQNDAVAEDLPDDVQE 408 Query: 302 RILRKAILKAEEDYADDAEVEAAQAEAVDEATKRSAPLTAHEERMIDEMRE-WAQKASRR 360 I R + E + DAE E +A A++ T EE +D +++ W Q S Sbjct: 409 LIPRYS---TEPETLTDAERERVEA-ALETVTVTLNQSQIQEE--LDRVKQLWRQAKSIE 462 Query: 361 IDSKARAIIDWLEANLKTSGDWNGRRVILFTEYRTTHQWLQ-QILASHGFGGDRLSLIHG 419 DSKA+ + +++ L D ++++FTEY T ++L+ ++ A + ++ ++G Sbjct: 463 TDSKAQMLKQFVDRILTEDPD---EKILIFTEYTDTLEYLRDRVFAEYD-----IAQVYG 514 Query: 420 GMDHEERERVKAAFQTNPDDAPVRILLATDAASEGIDLQNYCNCLIHVEIPYNPNVMEQR 479 +D + R + A F+ + I++ATDAA EG++LQ + + + + ++P++P ++QR Sbjct: 515 DLDQDRRRQEMADFENEKN-----IMIATDAAQEGLNLQ-FAHIMANFDLPWSPTRIDQR 568 Query: 480 NGRIDRHGQK 489 GR+ R+GQ+ Sbjct: 569 MGRLHRYGQE 578 >Cgl0717 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Cgl Corynebacterium glutamicum Length = 962 Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 139/491 (28%), Positives = 239/491 (48%), Gaps = 82/491 (16%) Query: 3 RANLLIADDVGLGKTIEAGLVIQELLLRHRARTVFVVCPASLQEKWRVEMQEKFGLEFKI 62 R +LIAD VGLGKT+E G+++ EL+ R R + VV P + E+++ EM +F + Sbjct: 133 RPRVLIADAVGLGKTLEMGMILAELIRRGRGERILVVTPRHIMEQFQQEMWTRFAIPLVR 192 Query: 63 VDTAYVKELRRGRGIHANPWTSFPRLITSIDWIKSGEALRMLRDVLPVRSSYPRKFDILV 122 +D+ ++++R+ NP+T FPR+I S+D +KS + L V +D +V Sbjct: 193 LDSVGIQQVRQKLPASRNPFTYFPRVIVSMDTLKSPKYRAQLEKV---------HWDAVV 243 Query: 123 VDEAHNVAPAGSAHYVLESQRTQLIRKIAPHFQHRLFLTATPHNGYTESFTSLLELLDDQ 182 +DE HN AG +Q +L R +AP + + +ATPHNG ESF +L LLD Sbjct: 244 IDEIHNATNAG-------TQNNELARTLAPTAEALILASATPHNGDPESFKEILRLLDPT 296 Query: 183 RFSRNILPDDKQLSQVMVRRLKT--DLLDKAGKPLYPKRNLQALAVPFTADERRMQKLLE 240 + D + ++++RR + ++ G+ P+ Q V Sbjct: 297 AVMPDGTIDAEAAQRLIIRRHRNSPEVSGFVGEKWAPRNEPQNFLV-------------- 342 Query: 241 AYCASREKTCAQAGTAATSFINNLLKKRLFSSPAAFASTLERHYATLTSGKATQKADELS 300 AS+E+ G AA E ++ ++ G + D L Sbjct: 343 --AASKEEN----GVAA-----------------------ELNHVWISPGASNPIKDRLF 373 Query: 301 DRILRKAILKAEEDYADDAEVEAAQAEAVDEATKR-SAPLTAHEERMIDEMREWAQKASR 359 L KA L + AA E V K+ SAP E+R ++ + + + Sbjct: 374 PWTLVKAFLSS----------PAALGETVSNRLKKASAP---EEKRALETLSQLNSAITP 420 Query: 360 RIDSKARAIIDWL-EANLKTSGDWNGRRVILFTEYRTTHQWLQQ-ILASHGFGGDRLSLI 417 + K ++++ +L + +K + D RV++F+E T WLQ+ ++ + ++++ Sbjct: 421 QTSQKYQSLLSYLGDIGVKKNSD---TRVVIFSERVATLHWLQENLIRDLKMPPNSIAVM 477 Query: 418 HGGMDHEERERVKAAFQTNPDDAPVRILLATDAASEGIDLQNYCNCLIHVEIPYNPNVME 477 HGG+ +E+ R+ F+ D+P+RI++ D ASEG++L C+ L+H +IP++ ++ Sbjct: 478 HGGLPDQEQMRLVDEFKKT--DSPIRIMITGDVASEGVNLHTLCHNLVHYDIPWSLIRIQ 535 Query: 478 QRNGRIDRHGQ 488 QRNGRIDR+GQ Sbjct: 536 QRNGRIDRYGQ 546 >ECs5261 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Ecs Escherichia coli O157:H7 Length = 943 Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 143/495 (28%), Positives = 247/495 (49%), Gaps = 75/495 (15%) Query: 3 RANLLIADDVGLGKTIEAGLVIQELLLRHRARTVFVVCPASLQEKWRVEMQEKFGLEFKI 62 R +LIAD VGLGKT+EAG+++ EL+ R R + + V+ S+ +++ E +F + Sbjct: 114 RQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVKSMLTQFQKEFWSRFAIPLTR 173 Query: 63 VDTAYVKELRRGRGIHANPWTSFPRLITSIDWIKSGEALRMLRDVLPVRSSYPRKFDILV 122 +D+A ++++R + NP+ F + I SID +K R + +++ +DI+V Sbjct: 174 LDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRH-----HLENAW---WDIIV 225 Query: 123 VDEAHNVAPAGSAHYVLESQRTQLIRKIAPHFQHRLFLTATPHNGYTESFTSLLELLDDQ 182 +DEAHNVA G++ S R++L + +A + L+ATPH+G ESF SL+ +LD Sbjct: 226 IDEAHNVAERGTS-----SLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPT 280 Query: 183 RFSRNILPDDKQLS-----QVMVRRLKTDLLDKAGKPLYPKRNLQALA-VPFTADERRMQ 236 + P + + + ++VRR K D+ D+ +P+RN+ L + A+E + Sbjct: 281 AIAN---PKEYEYADFADKNLVVRRFKKDVKDQMSGE-FPERNIVKLTRLASGAEEEAYR 336 Query: 237 KLLEAYCASREKTCAQAGTAATSFINNLLKKRLFSSPAAFASTLERHYATLTSGKATQKA 296 +L+E+ R+ QA + L+K LFSSP A AS + L S K Sbjct: 337 RLVESQF--RDDDDEQAQSNKGRLFKITLEKALFSSPMACASVVANRLKRLESRKDHNSQ 394 Query: 297 DELSDRILRKAILKAEEDYADDAEVEAAQAEAVDEATKRSAPLTAHEERMIDEMREWAQK 356 ++++ L +L ++A+Q Sbjct: 395 SQINE--LESLLLALN-------NIDASQF------------------------------ 415 Query: 357 ASRRIDSKARAIIDWLEANLKTSGDWNGRRVILFTEYRTTHQWL-QQILASHGFGGDRLS 415 SK + ++D + +L + R+++FTE T ++L QQ+ A D+++ Sbjct: 416 ------SKYQLLLDTIRKDLAWKANNTEDRLVIFTESIKTLEFLEQQLRADLKLKDDQIA 469 Query: 416 LIHGGM-DHEERERVKAAFQTNPDDAPVRILLATDAASEGIDLQNYCNCLIHVEIPYNPN 474 + G D E V+A +T +P+R+L+ +D ASEGI+L + + +IH +IP++ Sbjct: 470 TLRGDQGDTVLMETVEAFGKTQ---SPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLM 526 Query: 475 VMEQRNGRIDRHGQK 489 V +QRNGRIDR+GQK Sbjct: 527 VFQQRNGRIDRYGQK 541