BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0022.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc03764 [L] COG3727 DNA G Sme Sinorhizobium meliloti                 118   4e-27
Zvsr [L] COG3727 DNA G EcZ Escherichia coli O157:H7 EDL933            107   7e-24
ECs2698 [L] COG3727 DNA G Ecs Escherichia coli O157:H7                107   7e-24
RSc3439 [L] COG3727 DNA G Rso Ralstonia solanacearum                  107   9e-24
vsr [L] COG3727 DNA G Eco Escherichia coli K12                        107   1e-23

>SMc03764 [L] COG3727 DNA G Sme Sinorhizobium meliloti
          Length = 145

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 77/126 (61%), Gaps = 7/126 (5%)

Query: 2   EMMLRSALHRMGLRYRLHVRSLPGSPDLVFPRYRAVVFVHGCYWHAH-GCHRSTVPRSSQ 60
           EM LR ALHR+G R+R+    L G PD+V  +Y  V+FVHGC+WH H GC  +T P+S+ 
Sbjct: 25  EMALRRALHRLGFRFRVQGTGLRGKPDIVLAKYTTVIFVHGCFWHRHPGCKVATTPKSNT 84

Query: 61  GFWSEKFAANQLRDAKKEAALLDAGWRVMTVWECTLRGKTARQPEEVAMAIRKWLRSAAR 120
            FW+EKF+ N  RD +    L D GWRV+ VWEC +   +  +   VA  I K LRS   
Sbjct: 85  QFWTEKFSRNVKRDERVVKQLEDEGWRVIVVWECEVNALS--KAASVAEGIAKVLRS--- 139

Query: 121 RGRVGD 126
            GR GD
Sbjct: 140 -GRPGD 144


>Zvsr [L] COG3727 DNA G EcZ Escherichia coli O157:H7 EDL933
          Length = 156

 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 70/133 (52%)

Query: 1   VEMMLRSALHRMGLRYRLHVRSLPGSPDLVFPRYRAVVFVHGCYWHAHGCHRSTVPRSSQ 60
           +E  L S L   GL +R+   SLPG PD V   YR V+F HGC+WH H C+   VP +  
Sbjct: 24  IEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRT 83

Query: 61  GFWSEKFAANQLRDAKKEAALLDAGWRVMTVWECTLRGKTARQPEEVAMAIRKWLRSAAR 120
            FW EK   N  RD +  + L + GWRV+ VWEC LRG+   + E +   + +W+     
Sbjct: 84  EFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALRGREKLKDEALTERLEEWICGEGA 143

Query: 121 RGRVGDPPAPLLA 133
             ++      LLA
Sbjct: 144 SAQIDTQGIHLLA 156


>ECs2698 [L] COG3727 DNA G Ecs Escherichia coli O157:H7
          Length = 156

 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 70/133 (52%)

Query: 1   VEMMLRSALHRMGLRYRLHVRSLPGSPDLVFPRYRAVVFVHGCYWHAHGCHRSTVPRSSQ 60
           +E  L S L   GL +R+   SLPG PD V   YR V+F HGC+WH H C+   VP +  
Sbjct: 24  IEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRT 83

Query: 61  GFWSEKFAANQLRDAKKEAALLDAGWRVMTVWECTLRGKTARQPEEVAMAIRKWLRSAAR 120
            FW EK   N  RD +  + L + GWRV+ VWEC LRG+   + E +   + +W+     
Sbjct: 84  EFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALRGREKLKDEALTERLEEWICGEGA 143

Query: 121 RGRVGDPPAPLLA 133
             ++      LLA
Sbjct: 144 SAQIDTQGIHLLA 156


>RSc3439 [L] COG3727 DNA G Rso Ralstonia solanacearum
          Length = 154

 Score =  107 bits (266), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 8/111 (7%)

Query: 2   EMMLRSALHRMGLRYRLHVRSLPGSPDLVFPRYRAVVFVHGCYWHAHG-CHRSTVPRSSQ 60
           E  LRSA+HR GLR+RLH   LPG+PD+V P  +  +FVHGC+WH H  C  ++ PRS+ 
Sbjct: 24  ERALRSAMHRTGLRFRLHRTDLPGTPDIVLPATKIAIFVHGCFWHQHARCKLASSPRSNT 83

Query: 61  GFWSEKFAANQLRDAKKEAALLDAGWRVMTVWECTLRGKTARQPEEVAMAI 111
            +W  K   N  RD +   AL   GW V+TVWEC  R       +E+++A+
Sbjct: 84  EYWLPKLQRNVERDRRVAKALRQLGWAVLTVWECQTR-------KEISLAV 127


>vsr [L] COG3727 DNA G Eco Escherichia coli K12
          Length = 156

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 69/133 (51%)

Query: 1   VEMMLRSALHRMGLRYRLHVRSLPGSPDLVFPRYRAVVFVHGCYWHAHGCHRSTVPRSSQ 60
           +E  L S L   GL +R+   SLPG PD V   YR V+F HGC+WH H C+   VP +  
Sbjct: 24  IEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRT 83

Query: 61  GFWSEKFAANQLRDAKKEAALLDAGWRVMTVWECTLRGKTARQPEEVAMAIRKWLRSAAR 120
            FW EK   N  RD +  + L + GWRV+ VWEC LRG+     E +   + +W+     
Sbjct: 84  EFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGA 143

Query: 121 RGRVGDPPAPLLA 133
             ++      LLA
Sbjct: 144 SAQIDTQGIHLLA 156