BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0004.p (664 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0484 [L] COG2812 DNA polymerase III, gamma/tau subunits Sty S... 127 1e-28 ZdnaX [L] COG2812 DNA polymerase III, gamma/tau subunits EcZ Esc... 125 3e-28 ECs0523 [L] COG2812 DNA polymerase III, gamma/tau subunits Ecs E... 125 3e-28 dnaX [L] COG2812 DNA polymerase III, gamma/tau subunits Eco Esch... 125 3e-28 NMB1443 [L] COG2812 DNA polymerase III, gamma/tau subunits Nme N... 118 5e-26 >STM0484 [L] COG2812 DNA polymerase III, gamma/tau subunits Sty Salmonella typhimurium LT2 Length = 642 Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 125/233 (53%), Gaps = 13/233 (5%) Query: 6 KYRPQRFSEVRGQDHAVRLLSALSAKRTLGR--HLLLY-GAVGSGKTSLAQLFSRALNCN 62 K+RPQ F++V GQ+H +L+AL+ +LGR H L+ G G GKTS+A+L ++ LNC Sbjct: 9 KWRPQTFADVVGQEH---VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 Query: 63 AVEHDGSPCGRCDNCCQPRRYHF----EVDVPGRSD-EDLVGWARTLVQSHSDSRVRVLF 117 +PCG CDNC + + F E+D R+ ED + + + R +V Sbjct: 66 -TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 Query: 118 FDEAHALSKASQNGLLKLIEDSPAAVKFFFATSEAQMLNAALVSRLTELSIHALTPKVAY 177 DE H LS+ S N LLK +E+ PA VKF AT++ Q L ++SR + + AL + Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 Query: 178 DLLEYIAGRERIAYEPEALHLLIAAKPPYARD-LTIALQQLHDRGGRIDVDLV 229 LE+I E IA+EP AL LL A RD L++ Q + G++ V Sbjct: 185 HQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAV 237 >ZdnaX [L] COG2812 DNA polymerase III, gamma/tau subunits EcZ Escherichia coli O157:H7 EDL933 Length = 643 Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 125/234 (53%), Gaps = 13/234 (5%) Query: 5 QKYRPQRFSEVRGQDHAVRLLSALSAKRTLGR--HLLLY-GAVGSGKTSLAQLFSRALNC 61 +K+RPQ F++V GQ+H +L+AL+ +LGR H L+ G G GKTS+A+L ++ LNC Sbjct: 8 RKWRPQTFADVVGQEH---VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 62 NAVEHDGSPCGRCDNCCQPRRYHF----EVDVPGRSD-EDLVGWARTLVQSHSDSRVRVL 116 +PCG CDNC + + F E+D R+ ED + + + R +V Sbjct: 65 E-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 Query: 117 FFDEAHALSKASQNGLLKLIEDSPAAVKFFFATSEAQMLNAALVSRLTELSIHALTPKVA 176 DE H LS+ S N LLK +E+ P VKF AT++ Q L ++SR + + AL + Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 Query: 177 YDLLEYIAGRERIAYEPEALHLLIAAKPPYARD-LTIALQQLHDRGGRIDVDLV 229 LE+I E IA+EP AL LL A RD L++ Q + G++ V Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 >ECs0523 [L] COG2812 DNA polymerase III, gamma/tau subunits Ecs Escherichia coli O157:H7 Length = 643 Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 125/234 (53%), Gaps = 13/234 (5%) Query: 5 QKYRPQRFSEVRGQDHAVRLLSALSAKRTLGR--HLLLY-GAVGSGKTSLAQLFSRALNC 61 +K+RPQ F++V GQ+H +L+AL+ +LGR H L+ G G GKTS+A+L ++ LNC Sbjct: 8 RKWRPQTFADVVGQEH---VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 62 NAVEHDGSPCGRCDNCCQPRRYHF----EVDVPGRSD-EDLVGWARTLVQSHSDSRVRVL 116 +PCG CDNC + + F E+D R+ ED + + + R +V Sbjct: 65 E-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 Query: 117 FFDEAHALSKASQNGLLKLIEDSPAAVKFFFATSEAQMLNAALVSRLTELSIHALTPKVA 176 DE H LS+ S N LLK +E+ P VKF AT++ Q L ++SR + + AL + Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 Query: 177 YDLLEYIAGRERIAYEPEALHLLIAAKPPYARD-LTIALQQLHDRGGRIDVDLV 229 LE+I E IA+EP AL LL A RD L++ Q + G++ V Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 >dnaX [L] COG2812 DNA polymerase III, gamma/tau subunits Eco Escherichia coli K12 Length = 643 Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 125/234 (53%), Gaps = 13/234 (5%) Query: 5 QKYRPQRFSEVRGQDHAVRLLSALSAKRTLGR--HLLLY-GAVGSGKTSLAQLFSRALNC 61 +K+RPQ F++V GQ+H +L+AL+ +LGR H L+ G G GKTS+A+L ++ LNC Sbjct: 8 RKWRPQTFADVVGQEH---VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 62 NAVEHDGSPCGRCDNCCQPRRYHF----EVDVPGRSD-EDLVGWARTLVQSHSDSRVRVL 116 +PCG CDNC + + F E+D R+ ED + + + R +V Sbjct: 65 E-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 Query: 117 FFDEAHALSKASQNGLLKLIEDSPAAVKFFFATSEAQMLNAALVSRLTELSIHALTPKVA 176 DE H LS+ S N LLK +E+ P VKF AT++ Q L ++SR + + AL + Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 Query: 177 YDLLEYIAGRERIAYEPEALHLLIAAKPPYARD-LTIALQQLHDRGGRIDVDLV 229 LE+I E IA+EP AL LL A RD L++ Q + G++ V Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 >NMB1443 [L] COG2812 DNA polymerase III, gamma/tau subunits Nme Neisseria meningitidis MC58 Length = 704 Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 6/216 (2%) Query: 6 KYRPQRFSEVRGQDHAVRLLSALSAKRTLGRHLLLYGAVGSGKTSLAQLFSRALNCNAVE 65 K+RP+ F+++ GQ+H V+ L + L LL G G GKT++A++ +++LNC + Sbjct: 9 KWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ 68 Query: 66 HDGSPCGRCDNCCQ--PRRY--HFEVDVPGRSDEDLVGWARTLVQ-SHSDSRVRVLFFDE 120 H G PCG C++C Q RY E+D + D + Q + + + +V DE Sbjct: 69 H-GEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDE 127 Query: 121 AHALSKASQNGLLKLIEDSPAAVKFFFATSEAQMLNAALVSRLTELSIHALTPKVAYDLL 180 H LSK++ N +LK +E+ P VKF AT++ + ++SR + + +T + D L Sbjct: 128 VHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHL 187 Query: 181 EYIAGRERIAYEPEALHLLIAAKPPYARDLTIALQQ 216 ++ E+IAYEP AL LL A RD L Q Sbjct: 188 AHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQ 223