BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0001.p         (164 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr6368 [H] COG0142 Geranylgeranyl pyrophosphate synthase Mlo Me...   275   3e-74
RSc2222 [H] COG0142 Geranylgeranyl pyrophosphate synthase Rso Ra...   126   2e-29
NMB0261 [H] COG0142 Geranylgeranyl pyrophosphate synthase Nme Ne...   114   1e-25
PA4043 [H] COG0142 Geranylgeranyl pyrophosphate synthase Pae Pse...   112   2e-25
ispA [H] COG0142 Geranylgeranyl pyrophosphate synthase Eco Esche...   112   4e-25

>mlr6368 [H] COG0142 Geranylgeranyl pyrophosphate synthase Mlo Mesorhizobium
           loti
          Length = 321

 Score =  275 bits (704), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 147/164 (89%), Positives = 152/164 (92%)

Query: 1   VRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIVTMHRMKSGALVRASVRMGALCAVADD 60
           VRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIV MHRMKSGALVRASVRMGALCA+A+D
Sbjct: 158 VRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIVAMHRMKSGALVRASVRMGALCAIAED 217

Query: 61  AAHAALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPGKDEAAQKPTCASFMGLQA 120
           AAHAALYCALD YSACFGLALQV+DDILD TADTA LGKTPGKD AAQKPTCAS MGLQA
Sbjct: 218 AAHAALYCALDRYSACFGLALQVVDDILDATADTATLGKTPGKDAAAQKPTCASIMGLQA 277

Query: 121 ARQFALDLLRDSGEAIAPLGPRTERLAQILQRTNAYLFKHAPSA 164
           ARQ ALDLLRD+GEAI PLG R ERLAQ+LQR NAYLFKHAP A
Sbjct: 278 ARQLALDLLRDAGEAIPPLGTRAERLAQMLQRANAYLFKHAPCA 321


>RSc2222 [H] COG0142 Geranylgeranyl pyrophosphate synthase Rso Ralstonia
           solanacearum
          Length = 299

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 84/119 (70%), Gaps = 4/119 (3%)

Query: 1   VRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIVTMHRMKSGALVRASVRMGALCAVADD 60
           V ELA+A  + G AGGQA+DL  VG  +  D + TMHRMK+GAL+RAS+RMGALCA    
Sbjct: 141 VGELARASGSLGMAGGQAIDLQSVGVALSQDALETMHRMKTGALLRASLRMGALCA---- 196

Query: 61  AAHAALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPGKDEAAQKPTCASFMGLQ 119
             +AA    +D Y+   GLA QV+DDILDVTADTA LGKT GKDEA  KPT  S +GL+
Sbjct: 197 GVNAAALEQVDAYAGAVGLAFQVVDDILDVTADTATLGKTAGKDEANDKPTYVSILGLE 255


>NMB0261 [H] COG0142 Geranylgeranyl pyrophosphate synthase Nme Neisseria
           meningitidis MC58
          Length = 259

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 90/147 (61%), Gaps = 5/147 (3%)

Query: 4   LAQAVSAEGAAGGQAMDLSLVGKHVELDRIVTMHRMKSGALVRASVRMGAL-CAVADDAA 62
           LA+A  + G AGGQA+DL+ VGK +    +  MH +K+GAL+RA+V +GA  C    DA 
Sbjct: 108 LAKAGGSRGMAGGQAIDLANVGKQMVQADLEQMHSLKTGALIRAAVLLGATACPDLSDAE 167

Query: 63  HAALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPGKDEAAQKPTCASFMGLQAAR 122
                  LD Y+A  GLA QVIDD+LD  ADTA LGKT GKD    KPT    MGL+AAR
Sbjct: 168 ----LSVLDAYAAKLGLAFQVIDDVLDCEADTATLGKTAGKDADNDKPTYVKLMGLEAAR 223

Query: 123 QFALDLLRDSGEAIAPLGPRTERLAQI 149
            +A  L+ ++   + P G +  RL Q+
Sbjct: 224 SYAHKLVAEAVALLEPFGDKALRLRQL 250


>PA4043 [H] COG0142 Geranylgeranyl pyrophosphate synthase Pae Pseudomonas
           aeruginosa
          Length = 295

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 95/155 (61%), Gaps = 7/155 (4%)

Query: 4   LAQAVSAEGAAGGQAMDLSLVGKHVELDRIVTMHRMKSGALVRASVRMGALCAVADDAAH 63
           LA+A  + G  GGQA+DL  VG  ++   +  MHR K+GAL+ ASVR+GAL   A   A 
Sbjct: 144 LARAAGSAGMVGGQAIDLGSVGVALDQAALEVMHRHKTGALIEASVRLGAL---ASGRAE 200

Query: 64  AALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPGKDEAAQKPTCASFMGLQAARQ 123
            A   AL+ Y+   GLA QV DDILDV +DTA LGKT GKD+A  KPT  + +GL+AA+ 
Sbjct: 201 PASLAALERYAEAIGLAFQVQDDILDVESDTATLGKTQGKDQAHNKPTYPALLGLEAAKG 260

Query: 124 FALDLLRDSGEAIAPLGPRTERLAQ----ILQRTN 154
           +AL+L   +  A+    P  + L Q    I++R N
Sbjct: 261 YALELRDLALAALDGFPPSADPLRQLARYIVERRN 295


>ispA [H] COG0142 Geranylgeranyl pyrophosphate synthase Eco Escherichia
           coli K12
          Length = 299

 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 88/143 (61%), Gaps = 3/143 (2%)

Query: 1   VRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIVTMHRMKSGALVRASVRMGALCAVADD 60
           + ELA A    G  GGQA+DL   GKHV LD +  +HR K+GAL+RA+VR+GAL A   D
Sbjct: 142 ISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSA--GD 199

Query: 61  AAHAALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPGKDEAAQKPTCASFMGLQA 120
               AL   LD Y+   GLA QV DDILDV  DTA LGK  G D+   K T  + +GL+ 
Sbjct: 200 KGRRAL-PVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQ 258

Query: 121 ARQFALDLLRDSGEAIAPLGPRT 143
           AR+ A DL+ D+ +++  L  ++
Sbjct: 259 ARKKARDLIDDARQSLKQLAEQS 281