BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0016.p (225 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3027 [K] COG2207 AraC-type DNA-binding domain-containing prote... 102 9e-22 CC0637 Non COG 101 1e-21 Rv3082c [K] COG2207 AraC-type DNA-binding domain-containing prot... 94 3e-19 MT3167 [K] COG2207 AraC-type DNA-binding domain-containing prote... 93 4e-19 L143624 [K] COG2207 AraC-type DNA-binding domain-containing prot... 91 1e-18 >PA3027 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 343 Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 73/202 (36%), Positives = 94/202 (46%), Gaps = 9/202 (4%) Query: 24 RHHAEFWLVTLIRICRALTDGRLVPKQIKLKH-----ARRETPLDVRSLLGCEIEFAADR 78 RH E L + + R + D P ++ L+H R E D + GC + FA Sbjct: 138 RHMVEHVLASWVLYARWIADLEGSPDEVWLEHDLPDGTRVE---DYETFFGCPVRFAQPC 194 Query: 79 DELLFPSRIGALPVVGADLHLNRMLLQYADEALRNRASRRSSVRSRVEGHIAQLLPHGKA 138 LL P ALP+ AD L R L ++A AL + RV+ + QLL G Sbjct: 195 SALLVPLDYLALPLRQADATLLRTLEEHA-LALMAELDDDEPLPLRVKNALRQLLKDGLP 253 Query: 139 NAEAVARRLGMSRRTLARALSSEGADFSDVLKAFRIALARHYLEDEELPISKIAWLLGYS 198 E VA + GM+ RTL R L G+ + L R LA HYL ELPI IA LG++ Sbjct: 254 RKERVAEKFGMTVRTLQRHLQQAGSSYQQTLDELRRELAEHYLLHSELPIQDIAQYLGFT 313 Query: 199 EVSSFTHAFVRWTGLTPRAYRS 220 E SF +F WTG TP YR Sbjct: 314 ESRSFHRSFKGWTGQTPGEYRQ 335 >CC0637 Non COG Length = 335 Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%) Query: 67 LLGCEIEFAADRDELLFPSRIGALPVVGADLHLNRMLLQYADEALRNRASRRSSVRSRVE 126 + C + F++ + + RI PV ++ +L+Q AD+ LR +++ VR RVE Sbjct: 183 IFQCPVTFSSPWNAMRLDPRIATWPVALQPRYVFGVLIQRADDLLRELEDQKT-VRGRVE 241 Query: 127 GHIAQLLPHGKANAEAVARRLGMSRRTLARALSSEGADFSDVLKAFRIALARHYLEDEEL 186 + LL G+ +AEAVAR LG SR+TL R L +EG + VL A R +A YL + Sbjct: 242 AVLLPLLHTGEVSAEAVARALGFSRQTLFRKLKAEGVTYKQVLDALRHRMALRYLSGAKA 301 Query: 187 PISKIAWLLGYSEVSSFTHAFVRWTGLTPRAYRS 220 +++ A+L+G+SE ++F+ AF RWTG +PR R+ Sbjct: 302 SVNETAYLVGFSEPAAFSRAFKRWTGRSPRHART 335 >Rv3082c [K] COG2207 AraC-type DNA-binding domain-containing proteins Mtu Mycobacterium tuberculosis H37Rv Length = 340 Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 98/213 (46%), Gaps = 3/213 (1%) Query: 11 IGFEYVNIDRSSDRHHAEFWLVTLIRICRALTDGRLVPKQIKLKHARRETPLDVRSLLGC 70 G+E E + R+ R L + + +HA+ T R LGC Sbjct: 127 FGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYREALGC 186 Query: 71 EIEFAADRDELLFPSRIGALPVVGADLHLNRMLLQYADEALRNRASRRSSVRSRVEGHIA 130 + F R+ P+ AD R+ +Y + +++ RV G Sbjct: 187 TVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLES---QYLPSDATLSERVVGLAR 243 Query: 131 QLLPHGKANAEAVARRLGMSRRTLARALSSEGADFSDVLKAFRIALARHYLEDEELPISK 190 +LLP G+ +AEA+A +L M RTL R L++EG D+++ R A A YL L +S+ Sbjct: 244 RLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLSQ 303 Query: 191 IAWLLGYSEVSSFTHAFVRWTGLTPRAYRSSNG 223 IA LLGYSE S+ + RW G+TPR YR+ G Sbjct: 304 IAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGG 336 >MT3167 [K] COG2207 AraC-type DNA-binding domain-containing proteins MtC Mycobacterium tuberculosis CDC1551 Length = 352 Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 98/213 (46%), Gaps = 3/213 (1%) Query: 11 IGFEYVNIDRSSDRHHAEFWLVTLIRICRALTDGRLVPKQIKLKHARRETPLDVRSLLGC 70 G+E E + R+ R L + + +HA+ T R LGC Sbjct: 139 FGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYREALGC 198 Query: 71 EIEFAADRDELLFPSRIGALPVVGADLHLNRMLLQYADEALRNRASRRSSVRSRVEGHIA 130 + F R+ P+ AD R+ +Y + +++ RV G Sbjct: 199 TVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLES---QYLPSDATLSERVVGLAR 255 Query: 131 QLLPHGKANAEAVARRLGMSRRTLARALSSEGADFSDVLKAFRIALARHYLEDEELPISK 190 +LLP G+ +AEA+A +L M RTL R L++EG D+++ R A A YL L +S+ Sbjct: 256 RLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLSQ 315 Query: 191 IAWLLGYSEVSSFTHAFVRWTGLTPRAYRSSNG 223 IA LLGYSE S+ + RW G+TPR YR+ G Sbjct: 316 IAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGG 348 >L143624 [K] COG2207 AraC-type DNA-binding domain-containing proteins Lla Lactococcus lactis Length = 324 Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 4/188 (2%) Query: 32 VTLIRICRALTDGRLVPKQIKLKHARRETPLDVRSLLGCEIEFAADRDELLFPSRIGALP 91 + ++ I R T ++P+++ + + L+V G E + + + L F + LP Sbjct: 137 LIILSILRTGTGQNIIPEKVISPYPFSSSILEV---FGISPELSKNDNLLSFNLQDLELP 193 Query: 92 VVGADLHLNRMLLQYADEALRNRASRRSSVRSRVEGHIAQLLPHGKANAEAVARRLGMSR 151 + + + RM+ + L + + S + + L+P G + + VAR+LG+S Sbjct: 194 FLTRNNSMWRMIEPELNRQLEEIKTPSDFINS-LHKEVQLLIPSGDCSIQNVARKLGISS 252 Query: 152 RTLARALSSEGADFSDVLKAFRIALARHYLEDEELPISKIAWLLGYSEVSSFTHAFVRWT 211 RTL R L+ G F L++ + +A H+ +D L +I++LLGYSEVSSFT AF +WT Sbjct: 253 RTLQRNLAQAGTTFKVELQSVQKKMALHFSKDLNLTTDEISYLLGYSEVSSFTRAFRKWT 312 Query: 212 GLTPRAYR 219 G+T YR Sbjct: 313 GMTLNQYR 320