BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0010.p         (408 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC3192 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib...    81   5e-15
CC0992 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib...    74   5e-13
MA2948 [K] COG1309 Transcriptional regulator Mac Methanosarcina ...    63   1e-09

>CC3192 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides
          Length = 411

 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 169/414 (40%), Gaps = 46/414 (11%)

Query: 10  RAEEILVSASRLFARHSYANVTMEQVAASVQAVPGALYHYFRDKEDLIFHCYLRGLAIYR 69
           + E IL +A+ +  R     +T+  VAASV     ++ +Y+R K+DL   C++RGL  + 
Sbjct: 20  KKETILAAATAILNRQGVRGMTLADVAASVGLNTTSVTYYYRKKDDLAAACFMRGLERFE 79

Query: 70  HEIEAAAEPGIDGLEIIRRF-------VRGRLRPEGQRMILFSDIDALAAPYSSEVHAKR 122
             +E AA        II+         +R RL  E   +  F++I AL  P    V    
Sbjct: 80  AMVEQAAGEATPAARIIKFLDLYLDLNLRVRL-GEATPLTSFAEIKALKEPLRGSV---- 134

Query: 123 WQNAALLADILDRGVA---DGSIA-CDEPQLTAVA--LISILDWVPFWLSERDYYTRQQA 176
                   D+  R  +   D ++A  D+ Q  A    L+  + W   WL   D     + 
Sbjct: 135 ---IGAFNDLFRRVRSFFDDPALAHLDKRQRNARTHLLMEQVFWSGRWLRRYDVEDYGRV 191

Query: 177 IDAIDDIITHGVYRREIALP--KMPEPLSLAP-FLEARAALNKRAAKFDRMLSIASDSFN 233
           ++ + DI+ +G+   E       +P+P  L+P  LE R          +  L  A+   N
Sbjct: 192 LERMSDILLNGLPTAERGWNPHALPDPTPLSPEGLEWR----------ETFLVAATRLIN 241

Query: 234 RRGASGTSLESIAVDAGMTRAGIYYHFSEKESLLLACLRRGLAGEVSIREHLQEHSL--G 291
           +RG  G S+E I+    +T+   Y+H  +K++L+  C  R     V+ R  L   +L   
Sbjct: 242 QRGYRGASVEDISAALNVTKGSFYHHHDDKDALVAECFERTFT--VTRRSQLDARALPTD 299

Query: 292 AFDHIVQRIRLLLMLHDTPCGPKATYHNINYLNDDDRKAYVGDVLATIRQDQNSYQRWIE 351
           ++  +V     L     +  GP     ++  L +  R       +   ++  +     + 
Sbjct: 300 SWTQLVSTAAGLTSYQLSEHGPLLRASSLGALPEPLRSDMADGYMRGWQRFASIISDGVA 359

Query: 352 EGRFRRIDTYFAERILTGMGHWYPIWFKTRRDWSPA----EIADHFARLFLAGL 401
           +G  R ID   A  ++  M +       +   W P     E AD FAR  L G+
Sbjct: 360 DGSIRAIDASIAAHMINSMLNAA----ASLEAWVPGLQREEAADLFARPLLTGV 409


>CC0992 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides
          Length = 210

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 2/181 (1%)

Query: 12  EEILVSASRLFARHSYANVTMEQVAASVQAVPGALYHYFRDKEDLIFHCYLRGLAIYRHE 71
           EEIL +A ++     +A  TM ++AA++     ALY+YF +K+ L +  + R L  +   
Sbjct: 28  EEILRAAIKIINTKGFAAATMTEIAAAIDLRDAALYYYFPNKQALAYTGHQRSLERFEAI 87

Query: 72  IEAAAEPGIDGLEIIRRFVRGRLRPE--GQRMILFSDIDALAAPYSSEVHAKRWQNAALL 129
           + A    G  GL  +RRF+   L         + F D   L A     +     + A  L
Sbjct: 88  LIAVEAGGGTGLCKLRRFLHAVLEDGVVNGPQLYFGDHSYLDAAQQRAIDTWTVRLAKRL 147

Query: 130 ADILDRGVADGSIACDEPQLTAVALISILDWVPFWLSERDYYTRQQAIDAIDDIITHGVY 189
              L+ G+ADG+IA  EP+L    L+ +L W+  W       T ++ +DAI+     G+ 
Sbjct: 148 ERFLEEGMADGTIATCEPRLVVQLLVGMLIWLTKWTPTTPGLTNERLLDAIETTALSGLA 207

Query: 190 R 190
           +
Sbjct: 208 K 208


>MA2948 [K] COG1309 Transcriptional regulator Mac Methanosarcina
           acetivorans str.C2A
          Length = 230

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 19/161 (11%)

Query: 14  ILVSASRLFARHSYANVTMEQVAASVQAVPGALYHYFRDKEDLIFHCYLRGLAIYRH-EI 72
           I+ +A +LF    Y NV+M+++A+ V+    ALY+YF+DKE L F    RG+ I+R    
Sbjct: 18  IINAAEKLFFSRGYDNVSMDEIASEVELSKPALYYYFKDKESLFFAVVNRGVKIFRDITT 77

Query: 73  EAAAEPGIDGLEI-IRRFVRGRLRPE------------GQRMILFSDIDALAAPYSSEVH 119
           E        GL++        R   E              R  L +D D   +P + E+ 
Sbjct: 78  EELKNSQTSGLKVGAINLATARFNQEYPDYAKAHVHFWSGRFDLSNDKD--LSPDAKEII 135

Query: 120 AKRWQNAALLADILDRGVADGSIACD-EPQLTAV--ALISI 157
               +N  ++  I+  G+ DG+   D  P LTAV   LISI
Sbjct: 136 EFSCENYRIIHSIIKNGIEDGTFRSDANPLLTAVLIGLISI 176