BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0007.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc00347 [K] COG0782 Transcription elongation factor Sme Sinorhi...   100   8e-22
PA5274 [K] COG0782 Transcription elongation factor Pae Pseudomon...    85   4e-17
mll3994 [K] COG0782 Transcription elongation factor Mlo Mesorhiz...    84   9e-17
rnk [K] COG0782 Transcription elongation factor Eco Escherichia ...    75   6e-14
Zrnk [K] COG0782 Transcription elongation factor EcZ Escherichia...    75   6e-14

>SMc00347 [K] COG0782 Transcription elongation factor Sme Sinorhizobium
           meliloti
          Length = 135

 Score =  100 bits (249), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 81/126 (64%), Gaps = 1/126 (0%)

Query: 10  TAPALPPIVITASEAHRLSALADSSMAVFPRVAQFLARETDRAQLVADDADLHDVVRMGS 69
           T   LP IVI A +  RL+A+A S++   P VA+ L  E DRA++ A      D V+MGS
Sbjct: 6   TRKKLPSIVINAEDHARLTAIASSALDRVPDVAEALLSELDRARIAAPGKLPKDSVQMGS 65

Query: 70  LVRYRDDETGDVREVVLVYPHEADIALRRISVLTPVGAALIGLSVGQTIDFQTPSQQTRS 129
            V + D + G  +EV LVYP EADI   +ISVLTP+GAALIGLSVGQ+ID+   + +   
Sbjct: 66  TVAF-DADNGFAKEVRLVYPGEADIEAGKISVLTPIGAALIGLSVGQSIDWVDRAGKVHR 124

Query: 130 VTILAV 135
           +TI +V
Sbjct: 125 MTIRSV 130


>PA5274 [K] COG0782 Transcription elongation factor Pae Pseudomonas
           aeruginosa
          Length = 134

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 4/125 (3%)

Query: 15  PPIVITASEAHRLSALADSSMAVFPRVAQFLARETDRAQLVADDADLHDVVRMGSLVRYR 74
           PPI IT  +  RL  L D  +  F   A+ L  E  RAQ+V  D     VV M S VR R
Sbjct: 4   PPITITRLDLQRLERLLDG-LDEFGPAAEALEAELSRAQVVGHDEIPPGVVTMNSTVRCR 62

Query: 75  DDETGDVREVVLVYPHEADIALR-RISVLTPVGAALIGLSVGQTIDFQTPSQQTRSVTIL 133
           ++ +G    + LVYP   D+A   ++S+L PVG AL+GL++GQTID+  PS +T  +T+L
Sbjct: 63  EESSGKEYTLTLVYPE--DVAGEGKVSILAPVGTALLGLTIGQTIDWPAPSGKTLKLTLL 120

Query: 134 AVTHE 138
            + ++
Sbjct: 121 EIEYQ 125


>mll3994 [K] COG0782 Transcription elongation factor Mlo Mesorhizobium loti
          Length = 140

 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 73/119 (61%), Gaps = 1/119 (0%)

Query: 17  IVITASEAHRLSALADSSMAVFPRVAQFLARETDRAQLVADDADLHDVVRMGSLVRYRDD 76
           I+I+ ++  RL+ LA + +   P  A+ L  E DRA +    A   DVVRMGS V  R  
Sbjct: 13  ILISDTDHDRLTGLARALLDRAPETAEELLFEMDRAVVTDAAAMPADVVRMGSAVTVRG- 71

Query: 77  ETGDVREVVLVYPHEADIALRRISVLTPVGAALIGLSVGQTIDFQTPSQQTRSVTILAV 135
           E G  + ++LVYP EADIA  RISVLTP+G ALIG S+GQ + + +   +  SVT+ AV
Sbjct: 72  EGGATQRIMLVYPGEADIAENRISVLTPMGTALIGASIGQAVCWSSRGGRELSVTVEAV 130


>rnk [K] COG0782 Transcription elongation factor Eco Escherichia coli
           K12
          Length = 136

 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 69/124 (55%)

Query: 15  PPIVITASEAHRLSALADSSMAVFPRVAQFLARETDRAQLVADDADLHDVVRMGSLVRYR 74
           P I+I   +A R+  L +        +A  L  E DRAQ+ + +   HDVV M S V++R
Sbjct: 4   PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63

Query: 75  DDETGDVREVVLVYPHEADIALRRISVLTPVGAALIGLSVGQTIDFQTPSQQTRSVTILA 134
           +   G+VR   LVYP +   +  ++SV+ PVGAAL+GL VG +I ++ P      + +L 
Sbjct: 64  NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123

Query: 135 VTHE 138
           + ++
Sbjct: 124 LEYQ 127


>Zrnk [K] COG0782 Transcription elongation factor EcZ Escherichia coli
           O157:H7 EDL933
          Length = 136

 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 69/124 (55%)

Query: 15  PPIVITASEAHRLSALADSSMAVFPRVAQFLARETDRAQLVADDADLHDVVRMGSLVRYR 74
           P I+I   +A R+  L +        +A  L  E DRAQ+ + +   HDVV M S V++R
Sbjct: 4   PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63

Query: 75  DDETGDVREVVLVYPHEADIALRRISVLTPVGAALIGLSVGQTIDFQTPSQQTRSVTILA 134
           +   G+VR   LVYP +   +  ++SV+ PVGAAL+GL VG +I ++ P      + +L 
Sbjct: 64  NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123

Query: 135 VTHE 138
           + ++
Sbjct: 124 LEYQ 127