BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0005.p         (176 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0980 [P] COG2059 Chromate transport protein ChrA Rso Ralstoni...   126   2e-29
BH0870 [P] COG2059 Chromate transport protein ChrA Bha Bacillus ...    73   4e-13
BS_ywrA [P] COG2059 Chromate transport protein ChrA Bsu Bacillus...    64   1e-10
all1110 [P] COG2059 Chromate transport protein ChrA Nos Nostoc s...    63   3e-10
MJ0718 [P] COG2059 Chromate transport protein ChrA Mja Methanoco...    60   2e-09

>RSc0980 [P] COG2059 Chromate transport protein ChrA Rso Ralstonia
           solanacearum
          Length = 181

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 102/170 (60%)

Query: 3   ATLVTLALIFAELSLLAFGGGNTILPEMQRQVVDVHHWMTAQGFGALFALAQAAPGPNMM 62
           ATL  L   F  LS LA GG ++ LP+M R +VD  H+MT++   A++A++QAAPGPN++
Sbjct: 10  ATLFDLFWHFTVLSFLAIGGASSTLPDMHRFLVDTRHYMTSEQLSAMYAISQAAPGPNVL 69

Query: 63  VVPLVGWHVAGFSGVLVTSLAKFGPSSLVTGFALRLWERFKDRPWRRTVQAGLVPVTAGL 122
            V L GW  AG  G +V  L   GPS ++ G    +  +  D  W   ++ GL P+T GL
Sbjct: 70  FVELFGWQAAGLGGAVVAMLGICGPSCVIAGIVAHVMHQAPDARWVMLIRRGLAPLTIGL 129

Query: 123 VTASAIVITQASASSWGTILIAAMVAIATTTTRIHPLVALAAGAVLGLSG 172
           + ++  V+ +A+  S GT+ +     +A   TR+HPL+ +AAGA++G  G
Sbjct: 130 LFSTGWVLARATDHSVGTVALTVATVLACAFTRVHPLILVAAGALVGALG 179


>BH0870 [P] COG2059 Chromate transport protein ChrA Bha Bacillus halodurans
          Length = 180

 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 4/158 (2%)

Query: 16  SLLAFGGGNTILPEMQRQVVDVHHWMTAQGFGALFALAQAAPGP-NMMVVPLVGWHVAGF 74
           +++ +GGG   +P +Q +VVD + WMT   FG L A++ A PGP    +   +G+ V G 
Sbjct: 14  NIVGYGGGPASIPLIQMEVVDRYGWMTVSEFGELLAISNALPGPIATKMAGYIGYEVGGV 73

Query: 75  SGVLVTSLAKFGPSSLVTGFALRLWERFKDRPWRRTVQAGLVP---VTAGLVTASAIVIT 131
            G  +   A   PS +   F L +  +FKD P  + + + + P   V  G++     V +
Sbjct: 74  LGATIALFATVAPSLIAMVFLLGILYKFKDSPKVKKMTSFVKPTIGVLLGVLAIEFFVTS 133

Query: 132 QASASSWGTILIAAMVAIATTTTRIHPLVALAAGAVLG 169
              A +W T+L+A    +     ++HP   +A   + G
Sbjct: 134 WEGAGTWQTVLLAGGSFLLMEKWKVHPAFVIAGSLLYG 171


>BS_ywrA [P] COG2059 Chromate transport protein ChrA Bsu Bacillus subtilis
          Length = 178

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 6   VTLALIFAELSLLAFGGGNTILPEMQRQVVDVHHWMTAQGFGALFALAQAAPGP-NMMVV 64
           + L + F   +LL +GGG   +P M  +VV+ + W++   F  + ALA A PGP    + 
Sbjct: 4   IYLFMAFFIANLLGYGGGPASIPLMFEEVVNRYSWLSNDQFSNMLALANALPGPIATKIA 63

Query: 65  PLVGWHVAGFSGVLVTSLAKFGPSSLVTGFALRLWERFKDRPWRRTVQAGLVPVTA--GL 122
             VG+   G+ G L+  +A   PS+L     LR+ +RF+  P  + +   + PV A   L
Sbjct: 64  AYVGYSAGGWPGFLIALIATVVPSALALIVLLRIIQRFRQSPVIKGMTLSVQPVIAVMML 123

Query: 123 VTASAIVITQASASSW-GTILIAAMVAIATTTTRIHPLVALAAGAVLG 169
           +    I      A  W  +I+I  +  +A T  ++HP   + A  + G
Sbjct: 124 ILTWQIGADGIKAIGWVQSIVITGISLLAMTKFKMHPAFLIIAAFLYG 171


>all1110 [P] COG2059 Chromate transport protein ChrA Nos Nostoc sp. PCC 7120
          Length = 402

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 76/162 (46%)

Query: 10  LIFAELSLLAFGGGNTILPEMQRQVVDVHHWMTAQGFGALFALAQAAPGPNMMVVPLVGW 69
           L F ++  + +G G  +L  +QR +V+ + W+T+Q      A+ Q  PGP       +G+
Sbjct: 237 LFFLKIGCILYGSGYVLLAFLQRDLVERNQWLTSQQLLDAIAIGQFTPGPVFTTATFIGY 296

Query: 70  HVAGFSGVLVTSLAKFGPSSLVTGFALRLWERFKDRPWRRTVQAGLVPVTAGLVTASAIV 129
            +AG +G +  ++  F P+ ++         + +  PW      G+   + GL+      
Sbjct: 297 LLAGNAGAIAGTIGIFLPAFILVWIVNPWVTKLRQSPWASGFLDGVNAASLGLMAGVTYT 356

Query: 130 ITQASASSWGTILIAAMVAIATTTTRIHPLVALAAGAVLGLS 171
           + Q +   W TI++A + AIA    +I+    + AG  +G +
Sbjct: 357 LGQTALVDWLTIILAIVSAIAVFRFKINSAWLVLAGGAIGFA 398


>MJ0718 [P] COG2059 Chromate transport protein ChrA Mja Methanococcus
           jannaschii
          Length = 402

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 68/128 (53%)

Query: 1   MSATLVTLALIFAELSLLAFGGGNTILPEMQRQVVDVHHWMTAQGFGALFALAQAAPGPN 60
           + + L  L+ +  ++ + AFGGG   +P M  +VVD ++ M A+ F    AL Q  PGP 
Sbjct: 231 IDSKLFLLSTLMMKVDVFAFGGGYGSVPFMLHEVVDKYNLMDAKTFMDGIALGQITPGPI 290

Query: 61  MMVVPLVGWHVAGFSGVLVTSLAKFGPSSLVTGFALRLWERFKDRPWRRTVQAGLVPVTA 120
           ++    VG+ V GF G ++++++ F PS ++   ++ +++  K     + +   ++    
Sbjct: 291 VITATFVGYIVGGFIGSIISTISVFTPSFIILLSSIPIFDSLKHNTIFKNILHMILVSFV 350

Query: 121 GLVTASAI 128
           GL+ A  I
Sbjct: 351 GLLVAVTI 358