BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0004.p         (188 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0979 [P] COG2059 Chromate transport protein ChrA Rso Ralstoni...   132   5e-31
PA4289 [P] COG2059 Chromate transport protein ChrA Pae Pseudomon...    63   5e-10
MJ0718 [P] COG2059 Chromate transport protein ChrA Mja Methanoco...    62   8e-10
BH0870 [P] COG2059 Chromate transport protein ChrA Bha Bacillus ...    60   4e-09

>RSc0979 [P] COG2059 Chromate transport protein ChrA Rso Ralstonia
           solanacearum
          Length = 193

 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 115/171 (67%)

Query: 15  PDVGELFTGFFILGLTGFGGVLPLARHMMVEKRGWLTGAEFTDLLGLCQFLPGGNIINMS 74
           P   +LFT F  +GL+GFGGVLP AR  +VE+ GWL+ AEF ++L L Q LPG N++N+S
Sbjct: 20  PSCTKLFTEFARMGLSGFGGVLPFARRGIVERNGWLSDAEFAEMLSLGQVLPGPNVVNLS 79

Query: 75  VAVGLKFRGIPGAFAAILGLIAVPTAVVIGLGVIYGRFADDPVVRHLFGGLAAAAAGLLI 134
           V +G ++ GI GA +A+ GL+AVP  +++ + ++Y  ++  P+V+ L  G+AA AAGL++
Sbjct: 80  VMLGYRYHGIRGAASAMTGLVAVPAVLLLLIVMLYDHYSALPLVQQLLKGMAAVAAGLVL 139

Query: 135 STAIKIAWPLRRDVLGLFIGALCVLAIAVFRLPLLPTLLTLAPLSIVLRSR 185
           +TAIK+A    R     +IG    L+I + + PLLP +  L PL++VL  R
Sbjct: 140 ATAIKLAQGQSRTRRAAWIGLAVFLSIGLLQWPLLPVMAVLIPLALVLEWR 190


>PA4289 [P] COG2059 Chromate transport protein ChrA Pae Pseudomonas
          aeruginosa
          Length = 401

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 10/91 (10%)

Query: 10 TKHVAPDVG-ELFTGFFILGLTGFGGVLPLA-----RHMMVEKRGWLTGAEFTDLLGLCQ 63
          ++H  PD    +F  F  LG + FGG  P+A     R   V +RGWL+ + + DL+ LCQ
Sbjct: 5  SRH--PDTALAVFLAFLKLGCSAFGG--PIAHLGYFRDEFVRRRGWLSESSYADLVALCQ 60

Query: 64 FLPGGNIINMSVAVGLKFRGIPGAFAAILGL 94
          FLPG     + +A+GL   G PGA AA LG 
Sbjct: 61 FLPGPASSQVGMALGLARAGYPGALAAWLGF 91


>MJ0718 [P] COG2059 Chromate transport protein ChrA Mja Methanococcus
           jannaschii
          Length = 402

 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 8   QTTKHVAPDVGELFTGFFILGLTGFGG--VLPLARHMMVEKRGWLTGAEFTDLLGLCQFL 65
           +  K   P    +F  F  LG+  FGG   +   R M+V+++ W+    F + + L Q +
Sbjct: 14  KMEKRNNPSALNIFMSFLKLGMVAFGGPTAIAYVREMVVDEKKWMDEKSFNNGVALAQII 73

Query: 66  PGGNIINMSVAVGLKFRGIPGAFAAILGLIAVPTAVVIGLGVIYGRFADDPVVRHLFGGL 125
           PG +++ ++  VG   RGI GAFAA +        +++ L +IY      P    +F  L
Sbjct: 74  PGASVMQVAAYVGFYLRGIVGAFAAFMAYALPAFLIMLFLTIIYMHVKSLPKTVSIFEAL 133

Query: 126 AAAAAGLLISTAIKIAWPLRR---DVLGLFIGALC 157
                 L  +  +  +    R   DV  L I AL 
Sbjct: 134 RIIVVSLAANGTLNFSKKNIRTIGDVFLLLISALL 168


>BH0870 [P] COG2059 Chromate transport protein ChrA Bha Bacillus halodurans
          Length = 180

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 7/108 (6%)

Query: 19  ELFTGFFILGLTGFGG---VLPLARHMMVEKRGWLTGAEFTDLLGLCQFLPGGNIINMSV 75
           E+F  FFI  + G+GG    +PL +  +V++ GW+T +EF +LL +   LPG     M+ 
Sbjct: 5   EIFLAFFIPNIVGYGGGPASIPLIQMEVVDRYGWMTVSEFGELLAISNALPGPIATKMAG 64

Query: 76  AVGLKFRGIPGAFAAILGLIAVPT--AVVIGLGVIYGRFADDPVVRHL 121
            +G +  G+ GA  A+   +A P+  A+V  LG++Y +F D P V+ +
Sbjct: 65  YIGYEVGGVLGATIALFATVA-PSLIAMVFLLGILY-KFKDSPKVKKM 110